Lineage for d2pobb1 (2pob B:206-474)

  1. Root: SCOP 1.75
  2. 758332Class a: All alpha proteins [46456] (284 folds)
  3. 776482Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
    multihelical; 3 layers or orthogonally packed helices
  4. 776483Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (1 family) (S)
  5. 776484Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (33 proteins)
  6. 776796Protein Peroxisome proliferator activated receptor gamma, PPAR-gamma [48524] (1 species)
  7. 776797Species Human (Homo sapiens) [TaxId:9606] [48525] (46 PDB entries)
    Uniprot P37231 232-505
  8. 776836Domain d2pobb1: 2pob B:206-474 [149718]
    automatically matched to d1wm0x_
    complexed with gol, gw4

Details for d2pobb1

PDB Entry: 2pob (more details), 2.3 Å

PDB Description: ppargamma ligand binding domain complexed with a farglitazar analogue gw4709
PDB Compounds: (B:) Peroxisome proliferator-activated receptor gamma

SCOP Domain Sequences for d2pobb1:

Sequence, based on SEQRES records: (download)

>d2pobb1 a.123.1.1 (B:206-474) Peroxisome proliferator activated receptor gamma, PPAR-gamma {Human (Homo sapiens) [TaxId: 9606]}
pesadlralakhlydsyiksfpltkakarailtgkttdkspfviydmnslmmgedkikfk
hitplqeqskevairifqgcqfrsveavqeiteyaksipgfvnldlndqvtllkygvhei
iytmlaslmnkdgvlisegqgfmtreflkslrkpfgdfmepkfefavkfnalelddsdla
ifiaviilsgdrpgllnvkpiediqdnllqalelqlklnhpessqlfakllqkmtdlrqi
vtehvqllqvikktetdmslhpllqeiyk

Sequence, based on observed residues (ATOM records): (download)

>d2pobb1 a.123.1.1 (B:206-474) Peroxisome proliferator activated receptor gamma, PPAR-gamma {Human (Homo sapiens) [TaxId: 9606]}
pesadlralakhlydsyiksfpltkakarailtgspfviydmnslmmgqskevairifqg
cqfrsveavqeiteyaksipgfvnldlndqvtllkygvheiiytmlaslmnkdgvliseg
qgfmtreflkslrkpfgdfmepkfefavkfnalelddsdlaifiaviilsgdrpgllnvk
piediqdnllqalelqlklnhpessqlfakllqkmtdlrqivtehvqllqvikktetlhp
llqeiyk

SCOP Domain Coordinates for d2pobb1:

Click to download the PDB-style file with coordinates for d2pobb1.
(The format of our PDB-style files is described here.)

Timeline for d2pobb1: