Lineage for d2p7ja1 (2p7j A:181-273)

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2970038Fold d.110: Profilin-like [55769] (10 superfamilies)
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. 2970927Superfamily d.110.6: Sensory domain-like [103190] (5 families) (S)
    alpha(2)-beta(2)-alpha(2)-beta(3); possibly related to the PAS domain
  5. 2970952Family d.110.6.2: YkuI C-terminal domain-like [143732] (3 proteins)
    PfamB PB021678
  6. 2970953Protein GGDEF family protein VP0354, C-terminal domain [419049] (1 species)
    protein is N-terminal region; consists of two sensory domain-like domains; there is a canonical sensory (PAS) domain in the middle region
  7. 2970954Species Vibrio parahaemolyticus [TaxId:670] [419536] (3 PDB entries)
    Uniprot Q87SR8 207-299
  8. 2970955Domain d2p7ja1: 2p7j A:181-273 [149287]
    Other proteins in same PDB: d2p7ja2, d2p7jb2
    complexed with acy, na, so4
    missing some secondary structures that made up less than one-third of the common domain

Details for d2p7ja1

PDB Entry: 2p7j (more details), 2.25 Å

PDB Description: Crystal structure of the domain of putative sensory box/GGDEF family protein from Vibrio parahaemolyticus
PDB Compounds: (A:) Putative sensory box/GGDEF family protein

SCOPe Domain Sequences for d2p7ja1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2p7ja1 d.110.6.2 (A:181-273) GGDEF family protein VP0354, C-terminal domain {Vibrio parahaemolyticus [TaxId: 670]}
nyspvrdfhielvkhkgfyiaspdesrlygdiipersqfnfsnmypdiwprvvseqagys
ysgehliafssikfvsneplhliidlsneqlsk

SCOPe Domain Coordinates for d2p7ja1:

Click to download the PDB-style file with coordinates for d2p7ja1.
(The format of our PDB-style files is described here.)

Timeline for d2p7ja1:

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Domains from same chain:
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d2p7ja2