Lineage for d2jb6b1 (2jb6 B:3-120)

  1. Root: SCOPe 2.03
  2. 1287432Class b: All beta proteins [48724] (174 folds)
  3. 1287433Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 1287434Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 1287435Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 1287638Protein Immunoglobulin heavy chain variable domain, VH [88543] (21 species)
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 1287816Species Human (Homo sapiens), cluster 3 [TaxId:9606] [88547] (33 PDB entries)
    Uniprot Q6N089 20-243 # 95% sequence identity; natural chimera: antibody heavy chain (Fab HYB3)
  8. 1287879Domain d2jb6b1: 2jb6 B:3-120 [147957]
    Other proteins in same PDB: d2jb6a1, d2jb6a2, d2jb6b2, d2jb6h2, d2jb6l1, d2jb6l2
    automatically matched to d1nl0h1
    complexed with t5c

Details for d2jb6b1

PDB Entry: 2jb6 (more details), 2.85 Å

PDB Description: fab fragment in complex with small molecule hapten, crystal form-2
PDB Compounds: (B:) fab fragment mor03268 heavy chain

SCOPe Domain Sequences for d2jb6b1:

Sequence, based on SEQRES records: (download)

>d2jb6b1 b.1.1.1 (B:3-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

Sequence, based on observed residues (ATOM records): (download)

>d2jb6b1 b.1.1.1 (B:3-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

SCOPe Domain Coordinates for d2jb6b1:

Click to download the PDB-style file with coordinates for d2jb6b1.
(The format of our PDB-style files is described here.)

Timeline for d2jb6b1: