Lineage for d2fdma1 (2fdm A:1-239,A:308-362)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2413227Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2416558Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2418280Family c.1.8.5: Type II chitinase [51534] (15 proteins)
    glycosylase family 18
  6. 2418458Protein Signal processing protein (SPC-40, MGP-40) [89480] (5 species)
    secreted during involution
  7. 2418491Species Sheep (Ovis aries) [TaxId:9940] [109611] (17 PDB entries)
    Uniprot Q6TMG6
  8. 2418506Domain d2fdma1: 2fdm A:1-239,A:308-362 [147022]
    Other proteins in same PDB: d2fdma2
    automatically matched to d1ljya1

Details for d2fdma1

PDB Entry: 2fdm (more details), 3 Å

PDB Description: Crystal structure of the ternary complex of signalling glycoprotein frm sheep (SPS-40)with hexasaccharide (NAG6) and peptide Trp-Pro-Trp at 3.0A resolution
PDB Compounds: (A:) Chitinase-3-like protein 1

SCOPe Domain Sequences for d2fdma1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2fdma1 c.1.8.5 (A:1-239,A:308-362) Signal processing protein (SPC-40, MGP-40) {Sheep (Ovis aries) [TaxId: 9940]}

SCOPe Domain Coordinates for d2fdma1:

Click to download the PDB-style file with coordinates for d2fdma1.
(The format of our PDB-style files is described here.)

Timeline for d2fdma1: