SCOP 1.75: Domain d2cmzb1: 2cmz B:1-409

Lineage for d2cmzb1 (2cmz B:1-409)

1. Root: SCOP 1.75

2. Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)

3. Fold e.76: Viral glycoprotein ectodomain-like [161007] (1 superfamily)
   complex fold; contains three rigid, mostly-beta domains and an alpha-helical region, acting as a conformatiomal switch ("fusion stalk")

4. Superfamily e.76.1: Viral glycoprotein ectodomain-like [161008] (2 families)

5. Family e.76.1.2: Spike glycoprotein-like [161012] (1 protein)
   Pfam PF00974; Rhabdovirus spike glycoprotein

6. Protein Spike glycoprotein [161013] (1 species)

7. Species Vesicular stomatitis indiana virus [TaxId:11277] [161014] (2 PDB entries)
   Uniprot P04883 17-425
   representative prefusion form 2CMZ; representative acidic conformation 2J6J

8. Domain d2cmzb1: 2cmz B:1-409 [146416]
   automatically matched to 2CMZ A:1-409
   complexed with ca, pe4

Details for d2cmzb1

PDB Entry: 2cmz, 2.4 Å

PDB Description: crystal structure of vsv-indiana (mudd-summers strain) glycoprotein under its acidic conformation

PDB Compounds: (B:) Spike glycoprotein

SCOP Domain Sequences for d2cmzb1:

Sequence; same for both SEQRES and ATOM records:

>d2cmzb1 e.76.1.2 (B:1-409) Spike glycoprotein {Vesicular stomatitis indiana virus [TaxId: 11277]}
kftivfphnqkgnwknvpsnyhycpsssdlnwhndligtaiqvkmpkshkaiqadgwmch
askwvttcdfrwygpkyitqsirsftpsveqckesieqtkqgtwlnpgfppqscgyatvt
daeavivqvtphhvlvdeytgewvdsqfingkcsnyicptvhnsttwhsdykvkglcdsn
lismditffsedgelsslgkegtgfrsnyfayetggkackmqyckhwgvrlpsgvwfema
dkdlfaaarfpecpegssisapsqtsvdvsliqdverildyslcqetwskiraglpispv
dlsylapknpgtgpaftiingtlkyfetryirvdiaapilsrmvgmisgttterelwddw
apyedveigpngvlrtssgykfplymighgmldsdlhlsskaqvfehph

Timeline for d2cmzb1:

• d2cmzb1 is new in SCOP 1.75
  
• d2cmzb1 is called d2cmzb_ in SCOPe 2.01
  
• d2cmzb1 last appears in SCOPe 2.06, called d2cmzb_