SCOPe 2.05: Domain d2c39w1: 2c39 W:1-191

Lineage for d2c39w1 (2c39 W:1-191)

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.14: Ribosomal protein S5 domain 2-like [54210] (1 superfamily)
   core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover

4. Superfamily d.14.1: Ribosomal protein S5 domain 2-like [54211] (13 families)

5. Family d.14.1.4: Ribonuclease PH domain 1-like [54229] (11 proteins)

6. Protein Exosome complex exonuclease 2,ECX2 [159920] (2 species)

7. Species Sulfolobus solfataricus [TaxId:2287] [159922] (6 PDB entries)
   Uniprot Q9UXC0 1-191

8. Domain d2c39w1: 2c39 W:1-191 [146366]
   Other proteins in same PDB: d2c39a2, d2c39b1, d2c39b2, d2c39c2, d2c39d1, d2c39d2, d2c39e2, d2c39f1, d2c39f2, d2c39g2, d2c39i2, d2c39j1, d2c39j2, d2c39k2, d2c39l1, d2c39l2, d2c39m2, d2c39n1, d2c39n2, d2c39o2, d2c39p1, d2c39p2, d2c39q2, d2c39r1, d2c39r2, d2c39s2, d2c39t1, d2c39t2, d2c39u2, d2c39v1, d2c39v2, d2c39w2, d2c39x1, d2c39x2
   automatically matched to 2JE6 A:1-191
   protein/RNA complex; complexed with adp

Details for d2c39w1

PDB Entry: 2c39, 3.3 Å

PDB Description: rnase ph core of the archaeal exosome in complex with adp

PDB Compounds: (W:) probable exosome complex exonuclease 2

SCOPe Domain Sequences for d2c39w1:

Sequence, based on SEQRES records:

>d2c39w1 d.14.1.4 (W:1-191) Exosome complex exonuclease 2,ECX2 {Sulfolobus solfataricus [TaxId: 2287]}
msstpsnqniipiikkesivslfekgirqdgrkltdyrplsitldyakkadgsalvklgt
tmvlagtkleidkpyedtpnqgnlivnvellplayetfepgppdenaielarvvdrslrd
skaldltklviepgksvwtvwldvyvldyggnvldactlasvaalyntkvykveqhsngi
svnknevvgkl

Sequence, based on observed residues (ATOM records):

>d2c39w1 d.14.1.4 (W:1-191) Exosome complex exonuclease 2,ECX2 {Sulfolobus solfataricus [TaxId: 2287]}
msstpsnqniipiikkesivslfekgirqdgrkltdyrplsitldyakkadgsalvklgt
tmvlagtkleidkpyedtpnqgnlivnvellpdenaielarvvdrslrdskaldltklvi
epgksvwtvwldvyvldyggnvldactlasvaalyntkvykveisvnknevvgkl

Timeline for d2c39w1:

• d2c39w1 first appeared in SCOP 1.75
  
• d2c39w1 appears in SCOPe 2.04
  
• d2c39w1 appears in SCOPe 2.06
  
• d2c39w1 appears in the current release, SCOPe 2.08