SCOPe 2.03: Domain d2uubu1: 2uub U:2-25

Lineage for d2uubu1 (2uub U:2-25)

1. Root: SCOPe 2.03

2. Class j: Peptides [58231] (120 folds)

3. Fold j.9: Arg-rich RNA binding peptides [58321] (7 superfamilies)

4. Superfamily j.9.1: 30S ribosomal protein THX [58322] (1 family)

5. Family j.9.1.1: 30S ribosomal protein THX [58323] (1 protein)

6. Protein 30S ribosomal protein THX [58324] (1 species)

7. Species Thermus thermophilus [TaxId:274] [58325] (44 PDB entries)
   Uniprot P62612

8. Domain d2uubu1: 2uub U:2-25 [145756]
   Other proteins in same PDB: d2uubb1, d2uubc1, d2uubc2, d2uubd1, d2uube1, d2uube2, d2uubf1, d2uubg1, d2uubh1, d2uubj1, d2uubk1, d2uubl1, d2uubm1, d2uubn1, d2uubo1, d2uubp1, d2uubq1, d2uubr1, d2uubs1, d2uubt1
   automatically matched to 1YL4 X:2-25
   protein/RNA complex; complexed with k, mg, par, zn

Details for d2uubu1

PDB Entry: 2uub, 2.9 Å

PDB Description: structure of the thermus thermophilus 30s ribosomal subunit complexed with a valine-asl with cmo5u in position 34 bound to an mrna with a guu-codon in the a-site and paromomycin.

PDB Compounds: (U:) 30S ribosomal protein Thx

SCOPe Domain Sequences for d2uubu1:

Sequence; same for both SEQRES and ATOM records:

>d2uubu1 j.9.1.1 (U:2-25) 30S ribosomal protein THX {Thermus thermophilus [TaxId: 274]}
gkgdrrtrrgkiwrgtygkyrprk

Timeline for d2uubu1:

• d2uubu1 first appeared in SCOP 1.75
  
• d2uubu1 appears in SCOPe 2.02
  
• d2uubu1 appears in SCOPe 2.04
  
• d2uubu1 appears in the current release, SCOPe 2.08