SCOPe 2.06: Domain d2i2vd1: 2i2v D:1-209

Lineage for d2i2vd1 (2i2v D:1-209)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.43: Reductase/isomerase/elongation factor common domain [50412] (4 superfamilies)
   barrel, closed; n=6, S=10; greek-key

4. Superfamily b.43.3: Translation proteins [50447] (7 families)

5. Family b.43.3.2: Ribosomal protein L3 [50461] (1 protein)
   automatically mapped to Pfam PF00297

6. Protein Ribosomal protein L3 [50462] (4 species)
   superfamily fold is elaborated with additional structures

7. Species Escherichia coli [TaxId:562] [159159] (29 PDB entries)
   Uniprot P60438 1-209

8. Domain d2i2vd1: 2i2v D:1-209 [145485]
   Other proteins in same PDB: d2i2v01, d2i2v11, d2i2v21, d2i2v31, d2i2v41, d2i2vc1, d2i2vc2, d2i2ve1, d2i2vf1, d2i2vg1, d2i2vg2, d2i2vh1, d2i2vh2, d2i2vi1, d2i2vi2, d2i2vj1, d2i2vk1, d2i2vl1, d2i2vm1, d2i2vn1, d2i2vo1, d2i2vp1, d2i2vq1, d2i2vr1, d2i2vs1, d2i2vt1, d2i2vu1, d2i2vv1, d2i2vw1, d2i2vx1, d2i2vy1, d2i2vz1
   protein/RNA complex; complexed with mg, zn
   protein/RNA complex; complexed with mg, zn

Details for d2i2vd1

PDB Entry: 2i2v, 3.22 Å

PDB Description: Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. This file contains the 50s subunit of one 70s ribosome. The entire crystal structure contains two 70s ribosomes and is described in remark 400.

PDB Compounds: (D:) 50S ribosomal protein L3

SCOPe Domain Sequences for d2i2vd1:

Sequence; same for both SEQRES and ATOM records:

>d2i2vd1 b.43.3.2 (D:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]}
miglvgkkvgmtriftedgvsipvtvieveanrvtqvkdlandgyraiqvttgakkanrv
tkpeaghfakagveagrglwefrlaegeeftvgqsisvelfadvkkvdvtgtskgkgfag
tvkrwnfrtqdathgnslshrvpgsigqnqtpgkvfkgkkmagqmgnervtvqsldvvrv
daernlllvkgavpgatgsdlivkpavka

Timeline for d2i2vd1:

• d2i2vd1 first appeared in SCOP 1.75
  
• d2i2vd1 appears in SCOPe 2.05
  
• d2i2vd1 appears in SCOPe 2.07
  
• d2i2vd1 appears in the current release, SCOPe 2.08