SCOPe 2.07: Domain d1yyms1: 1yym S:1002-1027

Lineage for d1yyms1 (1yym S:1002-1027)

1. Root: SCOPe 2.07

2. Class k: Designed proteins [58788] (44 folds)

3. Fold k.23: Scorpion toxin-based designs [58917] (1 superfamily)

4. Superfamily k.23.1: Scorpion toxin-based designs [58918] (2 families)

5. Family k.23.1.2: Mini-protein reproducing the core of the CD4 surface [58922] (1 protein)

6. Protein Mini-protein reproducing the core of the CD4 surface [58923] (1 species)
   interacting with the hiv-1 envelope glycoprotein

7. Species Synthetic [58924] (5 PDB entries)

8. Domain d1yyms1: 1yym S:1002-1027 [144724]
   Other proteins in same PDB: d1yymg_, d1yymh1, d1yymh2, d1yyml1, d1yyml2, d1yymp_, d1yymq1, d1yymq2, d1yymr1, d1yymr2
   automatically matched to 1YYM M:2-27
   complexed with edo, ipa, nag, ndg

Details for d1yyms1

PDB Entry: 1yym, 2.2 Å

PDB Description: crystal structure of f23, a scorpion-toxin mimic of cd4, in complex with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody 17b

PDB Compounds: (S:) F23, scorpion-toxin mimic of CD4

SCOPe Domain Sequences for d1yyms1:

Sequence; same for both SEQRES and ATOM records:

>d1yyms1 k.23.1.2 (S:1002-1027) Mini-protein reproducing the core of the CD4 surface {Synthetic}
nlhfcqlrckslgllgkcagsfcacx

Timeline for d1yyms1:

• d1yyms1 first appeared in SCOP 1.75
  
• d1yyms1 appears in SCOPe 2.06
  
• d1yyms1 appears in the current release, SCOPe 2.08