SCOPe 2.05: Domain d1vs6y1: 1vs6 Y:1-58

Lineage for d1vs6y1 (1vs6 Y:1-58)

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.59: Ribosomal protein L30p/L7e [55128] (1 superfamily)
   core: beta-alpha-beta-alpha-beta; antiparallel beta-sheet: order 312; some similarity to the ferredoxin-like fold

4. Superfamily d.59.1: Ribosomal protein L30p/L7e [55129] (1 family)

5. Family d.59.1.1: Ribosomal protein L30p/L7e [55130] (2 proteins)

6. Protein Prokaryotic ribosomal protein L30 [55131] (3 species)
   short-chain member of the family

7. Species Escherichia coli [TaxId:562] [160395] (29 PDB entries)
   Uniprot P02430 1-58

8. Domain d1vs6y1: 1vs6 Y:1-58 [144475]
   Other proteins in same PDB: d1vs601, d1vs611, d1vs621, d1vs631, d1vs641, d1vs6c1, d1vs6c2, d1vs6d1, d1vs6e1, d1vs6f1, d1vs6g1, d1vs6g2, d1vs6h1, d1vs6h2, d1vs6i1, d1vs6i2, d1vs6j1, d1vs6k1, d1vs6l1, d1vs6m1, d1vs6n1, d1vs6o1, d1vs6p1, d1vs6q1, d1vs6r1, d1vs6s1, d1vs6t1, d1vs6u1, d1vs6v1, d1vs6w1, d1vs6x1, d1vs6z1
   complexed with mg
   complexed with mg

Details for d1vs6y1

PDB Entry: 1vs6, 3.46 Å

PDB Description: Crystal structure of the bacterial ribosome from escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution. this file contains the 50s subunit of one 70s ribosome. the entire crystal structure contains two 70s ribosomes and is described in remark 400.

PDB Compounds: (Y:) 50S ribosomal protein L30

SCOPe Domain Sequences for d1vs6y1:

Sequence; same for both SEQRES and ATOM records:

>d1vs6y1 d.59.1.1 (Y:1-58) Prokaryotic ribosomal protein L30 {Escherichia coli [TaxId: 562]}
aktikitqtrsaigrlpkhkatllglglrrightveredtpairgminavsfmvkvee

Timeline for d1vs6y1:

• d1vs6y1 first appeared in SCOP 1.75
  
• d1vs6y1 appears in SCOPe 2.04
  
• d1vs6y1 appears in SCOPe 2.06
  
• d1vs6y1 appears in the current release, SCOPe 2.08