SCOP 1.73: Species: Shigella flexneri [TaxId: 623]

Lineage for Species: Shigella flexneri [TaxId: 623]

Root: SCOP 1.73
Class c: Alpha and beta proteins (a/b) [51349] (141 folds)
Fold c.56: Phosphorylase/hydrolase-like [53162] (7 superfamilies)
core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
Superfamily c.56.5: Zn-dependent exopeptidases [53187] (8 families)
core: mixed beta-sheet of 8 strands, order 12435867; strands 2, 6 & 7 are antiparallel to the rest
Family c.56.5.4: Bacterial dinuclear zinc exopeptidases [53204] (17 proteins)
Protein Aminopeptidase YpdE [142520] (1 species)
Species Shigella flexneri [TaxId:623] [142521] (1 PDB entry)
hypothetical protein SF2450 (PDB)/SF2449.1 (UniProt)

PDB entry in Species: Shigella flexneri [TaxId: 623]:

Domain(s) for 1ylo:
1. Domain d1yloa2: 1ylo A:1-66,A:148-345 [123660]
  Other proteins in same PDB: d1yloa1, d1ylob1, d1yloc1, d1ylod1, d1yloe1, d1ylof1
  complexed with zn
2. Domain d1ylob2: 1ylo B:1-66,B:148-345 [123662]
  Other proteins in same PDB: d1yloa1, d1ylob1, d1yloc1, d1ylod1, d1yloe1, d1ylof1
  automatically matched to 1YLO A:1-66,A:148-345
  complexed with zn
3. Domain d1yloc2: 1ylo C:1-66,C:148-345 [123664]
  Other proteins in same PDB: d1yloa1, d1ylob1, d1yloc1, d1ylod1, d1yloe1, d1ylof1
  automatically matched to 1YLO A:1-66,A:148-345
  complexed with zn
4. Domain d1ylod2: 1ylo D:1-66,D:148-345 [123666]
  Other proteins in same PDB: d1yloa1, d1ylob1, d1yloc1, d1ylod1, d1yloe1, d1ylof1
  automatically matched to 1YLO A:1-66,A:148-345
  complexed with zn
5. Domain d1yloe2: 1ylo E:1-66,E:148-345 [123668]
  Other proteins in same PDB: d1yloa1, d1ylob1, d1yloc1, d1ylod1, d1yloe1, d1ylof1
  automatically matched to 1YLO A:1-66,A:148-345
  complexed with zn
6. Domain d1ylof2: 1ylo F:1-66,F:148-345 [123670]
  Other proteins in same PDB: d1yloa1, d1ylob1, d1yloc1, d1ylod1, d1yloe1, d1ylof1
  automatically matched to 1YLO A:1-66,A:148-345
  complexed with zn

More info for Species Shigella flexneri [TaxId:623] from c.56.5.4 Aminopeptidase YpdE

Timeline for Species Shigella flexneri [TaxId:623] from c.56.5.4 Aminopeptidase YpdE:

Species Shigella flexneri [TaxId:623] from c.56.5.4 Aminopeptidase YpdE is new in SCOP 1.73
Species Shigella flexneri [TaxId:623] from c.56.5.4 Aminopeptidase YpdE appears in SCOP 1.75
Species Shigella flexneri [TaxId:623] from c.56.5.4 Aminopeptidase YpdE appears in the current release, SCOPe 2.08