SCOPe 2.04: Protein: BH0863-like Ribonuclease H

Lineage for Protein: BH0863-like Ribonuclease H

Root: SCOPe 2.04
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
Superfamily c.55.3: Ribonuclease H-like [53098] (15 families)
consists of one domain of this fold
Family c.55.3.1: Ribonuclease H [53099] (5 proteins)
Protein BH0863-like Ribonuclease H [142490] (3 species)
new class of RNase H

Species:

Bacillus halodurans [TaxId:86665] [142491] (19 PDB entries)
Uniprot Q9KEI9 61-193! Uniprot Q9KEI9 62-193
BH0863
1. Domain for 1zbf:
  - Domain d1zbfa1: 1zbf A:62-193 [124850]
    complexed with so4; mutant
2. Domain for 1zbl:
  - Domain d1zbla1: 1zbl A:62-193 [124856]
    Other proteins in same PDB: d1zblb_
    protein/DNA complex; protein/RNA complex; complexed with mg; mutant
3. Domain for 2g8f:
  - Domain d2g8fa1: 2g8f A:61-193 [134770]
    protein/DNA complex; protein/RNA complex; complexed with cl, mg; mutant
4. Domain for 2g8h:
  - Domain d2g8ha_: 2g8h A: [134771]
    automated match to d1zbla1
    protein/DNA complex; protein/RNA complex; complexed with mg, vo4; mutant
5. Domain for 2g8i:
  - Domain d2g8ia_: 2g8i A: [134772]
    automated match to d1zbla1
    protein/DNA complex; protein/RNA complex; complexed with cl, mn, mpd; mutant
6. Domain for 2g8k:
  - Domain d2g8ka_: 2g8k A: [134774]
    automated match to d1zbla1
    protein/DNA complex; protein/RNA complex; complexed with ca; mutant
7. Domain for 2g8u:
  - Domain d2g8ua_: 2g8u A: [134786]
    automated match to d1zbfa1
    protein/DNA complex; protein/RNA complex; complexed with mg; mutant
8. Domain for 2g8v:
  - Domain d2g8va_: 2g8v A: [134787]
    automated match to d2g8fa1
    protein/DNA complex; protein/RNA complex; complexed with eoh, mg; mutant
9. Domain for 2g8w:
  - Domain d2g8wa_: 2g8w A: [134788]
    automated match to d2g8fa1
    protein/DNA complex; protein/RNA complex; complexed with ca; mutant
10. Domain for 2r7y:
  - Domain d2r7ya_: 2r7y A: [151657]
    automated match to d1zbfa1
    protein/DNA complex; protein/RNA complex; complexed with mg, po4; mutant
11. Domains for 3d0p:
  1. Domain d3d0pa1: 3d0p A:62-193 [157172]
    automatically matched to d1zbfa1
    protein/DNA complex; protein/RNA complex; complexed with na
  2. Domain d3d0pc1: 3d0p C:62-193 [157173]
    automatically matched to d1zbfa1
    protein/DNA complex; protein/RNA complex; complexed with na
12. Domain for 3ey1:
  - Domain d3ey1a_: 3ey1 A: [175303]
    automated match to d1zbfa1
    protein/DNA complex; complexed with gol
13. Domains for 3i8d:
  1. Domain d3i8da_: 3i8d A: [178144]
    automated match to d1zbfa1
    protein/DNA complex; complexed with gol
  2. Domain d3i8dc_: 3i8d C: [178145]
    automated match to d1zbfa1
    protein/DNA complex; complexed with gol
14. Domain for 3twh:
  - Domain d3twha_: 3twh A: [194591]
    automated match to d3ey1a_
    protein/DNA complex; protein/RNA complex; complexed with mg, po4; mutant
15. Domain for 3uld:
  - Domain d3ulda_: 3uld A: [194320]
    automated match to d3ey1a_
    protein/DNA complex; protein/RNA complex; complexed with mg; mutant
16. Domains for 4htu:
  1. Domain d4htua_: 4htu A: [192575]
    automated match to d1zbfa1
    protein/DNA complex; complexed with edo, gol, mg
  2. Domain d4htub_: 4htu B: [192574]
    automated match to d1zbfa1
    protein/DNA complex; complexed with edo, gol, mg
17. Domains for 4hue:
  1. Domain d4huea_: 4hue A: [192577]
    automated match to d1zbfa1
    protein/DNA complex; complexed with gol, mg
  2. Domain d4hueb_: 4hue B: [192899]
    automated match to d4htua_
    protein/DNA complex; complexed with gol, mg
18. Domains for 4huf:
  1. Domain d4hufa_: 4huf A: [192576]
    automated match to d1zbfa1
    protein/DNA complex; complexed with edo, gol, mg
  2. Domain d4hufb_: 4huf B: [192898]
    automated match to d4htua_
    protein/DNA complex; complexed with edo, gol, mg
19. Domains for 4hug:
  1. Domain d4huga_: 4hug A: [192578]
    automated match to d1zbfa1
    protein/DNA complex; complexed with edo, gol, mg
  2. Domain d4hugb_: 4hug B: [192900]
    automated match to d4htua_
    protein/DNA complex; complexed with edo, gol, mg
Escherichia coli [TaxId:562] [190024] (1 PDB entry)
- Domain for 2yv0:
  - Domain d2yv0x_: 2yv0 X: [170880]
    automated match to d1rbra_
    mutant
Shewanella oneidensis [TaxId:211586] [190023] (1 PDB entry)
- Domain for 2e4l:
  - Domain d2e4la_: 2e4l A: [163817]
    automated match to d1rbra_

More info for Protein BH0863-like Ribonuclease H from c.55.3.1: Ribonuclease H

Timeline for Protein BH0863-like Ribonuclease H from c.55.3.1: Ribonuclease H:

Protein BH0863-like Ribonuclease H from c.55.3.1: Ribonuclease H first appeared in SCOP 1.73
Protein BH0863-like Ribonuclease H from c.55.3.1: Ribonuclease H appears in SCOPe 2.03
Protein BH0863-like Ribonuclease H from c.55.3.1: Ribonuclease H appears in SCOPe 2.05
Protein BH0863-like Ribonuclease H from c.55.3.1: Ribonuclease H appears in the current release, SCOPe 2.08