SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Family b.45.1.3: UbiD middle domain-like

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2055232Fold b.45: Split barrel-like [50474] (3 superfamilies)
    barrel; n=6, S=10; greek-key
  4. 2055233Superfamily b.45.1: FMN-binding split barrel [50475] (5 families) (S)
    related to the ferredoxin reductase-like FAD-binding domain
  5. 2055414Family b.45.1.3: UbiD middle domain-like [141368] (2 protein domains)
    N terminal part of Pfam PF01977; overall structural similarity to one subunit of the NADH:FMN oxidoreductase-like family (50482); not known to bind a flavin cofactor; also includes the N-terminal alpha+beta subdomain (~110 residues)

Protein Domains:

  1. 20554153-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [141369] (1 species)
  2. 2284696automated matches [327997] (2 species)
    not a true protein
    1. 2284697Species Escherichia coli [TaxId:562] [327998] (1 PDB entry)
    2. 2284703Species Escherichia coli [TaxId:199310] [328004] (3 PDB entries)

More info for Family b.45.1.3: UbiD middle domain-like

Timeline for Family b.45.1.3: UbiD middle domain-like: