Lineage for Protein: DNA repair endonuclease XPF

  1. Root: SCOPe 2.01
  2. 901761Class a: All alpha proteins [46456] (284 folds)
  3. 916790Fold a.60: SAM domain-like [47768] (16 superfamilies)
    4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
  4. 916930Superfamily a.60.2: RuvA domain 2-like [47781] (7 families) (S)
    duplication: contains two helix-hairpin-helix (HhH) motifs
  5. 916973Family a.60.2.5: Hef domain-like [140629] (3 proteins)
    helicase/nuclease domain; forms homo and heterodimers; probably includes the Excinuclease UvrC C-terminal domain ((81795), that contains a single NMR structure of a monomeric truncated domain, 1kft)
  6. 916982Protein DNA repair endonuclease XPF [140634] (2 species)

Species:

  1. 916983Aeropyrum pernix [TaxId:56636] [140635] (2 PDB entries)
    Uniprot Q9YC15 160-229
    1. Domains for 2bgw:
      1. 916984Domain d2bgwa1: 2bgw A:160-229 [128500]
        Other proteins in same PDB: d2bgwa2, d2bgwb2
        protein/DNA complex; complexed with mg, so4
      2. 916985Domain d2bgwb1: 2bgw B:160-228 [128502]
        Other proteins in same PDB: d2bgwa2, d2bgwb2
        automatically matched to 2BGW A:160-229
        protein/DNA complex; complexed with mg, so4
    2. Domains for 2bhn:
      1. 916986Domain d2bhna1: 2bhn A:160-229 [128534]
        Other proteins in same PDB: d2bhna2, d2bhnb2, d2bhnc2, d2bhnd2
        automatically matched to 2BGW A:160-229
      2. 916987Domain d2bhnb1: 2bhn B:162-229 [128536]
        Other proteins in same PDB: d2bhna2, d2bhnb2, d2bhnc2, d2bhnd2
        automatically matched to 2BGW A:160-229
      3. 916988Domain d2bhnc1: 2bhn C:164-229 [128538]
        Other proteins in same PDB: d2bhna2, d2bhnb2, d2bhnc2, d2bhnd2
        automatically matched to 2BGW A:160-229
      4. 916989Domain d2bhnd1: 2bhn D:160-229 [128540]
        Other proteins in same PDB: d2bhna2, d2bhnb2, d2bhnc2, d2bhnd2
        automatically matched to 2BGW A:160-229
  2. 916990Human (Homo sapiens) [TaxId:9606] [140636] (3 PDB entries)
    Uniprot Q92889 823-905! Uniprot Q92889 837-898
    1. Domain for 1z00:
    2. Domain for 2a1j:
    3. Domains for 2aq0:
      1. 916992Domain d2aq0a1: 2aq0 A:2-84 [127136]
        automatically matched to 1Z00 B:823-905
      2. 916993Domain d2aq0b1: 2aq0 B:102-184 [127137]
        automatically matched to 1Z00 B:823-905

More info for Protein DNA repair endonuclease XPF from a.60.2.5: Hef domain-like

Timeline for Protein DNA repair endonuclease XPF from a.60.2.5: Hef domain-like: