SCOPe 2.06: Domain d2nvxe2: 2nvx E:144-215

Lineage for d2nvxe2 (2nvx E:144-215)

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.78: RPB5-like RNA polymerase subunit [55286] (1 superfamily)
   core: beta-alpha-beta-alpha-beta(2); 2 layers, alpha/beta

4. Superfamily d.78.1: RPB5-like RNA polymerase subunit [55287] (2 families)
   automatically mapped to Pfam PF01191

5. Family d.78.1.1: RPB5 [55288] (2 proteins)

6. Protein Eukaryotic RPB5 C-terminal domain [55292] (2 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [55293] (26 PDB entries)
   Uniprot P20434; part of multichain biological unit

8. Domain d2nvxe2: 2nvx E:144-215 [138672]
   Other proteins in same PDB: d2nvxa1, d2nvxb1, d2nvxc1, d2nvxc2, d2nvxe1, d2nvxf1, d2nvxh1, d2nvxi1, d2nvxi2, d2nvxj1, d2nvxk1, d2nvxl1
   automatically matched to d1dzfa2
   protein/DNA complex; protein/RNA complex; complexed with dut, mg, zn

Details for d2nvxe2

PDB Entry: 2nvx, 3.6 Å

PDB Description: RNA polymerase II elongation complex in 5 mM Mg+2 with 2'-dUTP

PDB Compounds: (E:) DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide

SCOPe Domain Sequences for d2nvxe2:

Sequence; same for both SEQRES and ATOM records:

>d2nvxe2 d.78.1.1 (E:144-215) Eukaryotic RPB5 C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
ithhelvpkhirlssdekrellkryrlkesqlpriqradpvalylglkrgevvkiirkse
tsgryasyricm

Timeline for d2nvxe2:

• d2nvxe2 first appeared in SCOP 1.73
  
• d2nvxe2 appears in SCOPe 2.05
  
• d2nvxe2 appears in SCOPe 2.07
  
• d2nvxe2 appears in the current release, SCOPe 2.08