SCOPe 2.06: Domain d2ja6c2: 2ja6 C:42-172

Lineage for d2ja6c2 (2ja6 C:42-172)

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.181: Insert subdomain of RNA polymerase alpha subunit [56552] (1 superfamily)
   unusual fold; contains a left-handed beta-alpha-beta unit

4. Superfamily d.181.1: Insert subdomain of RNA polymerase alpha subunit [56553] (1 family)
   automatically mapped to Pfam PF01000

5. Family d.181.1.1: Insert subdomain of RNA polymerase alpha subunit [56554] (2 proteins)

6. Protein RPB3 [64462] (2 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [64463] (24 PDB entries)
   Uniprot P16370; part of multichain biological unit

8. Domain d2ja6c2: 2ja6 C:42-172 [138177]
   Other proteins in same PDB: d2ja6a1, d2ja6b1, d2ja6c1, d2ja6d1, d2ja6e1, d2ja6e2, d2ja6f1, d2ja6g1, d2ja6g2, d2ja6h1, d2ja6i1, d2ja6i2, d2ja6j1, d2ja6k1, d2ja6l1
   automatically matched to d1i3qc2
   protein/DNA complex; protein/RNA complex; complexed with mg, zn

Details for d2ja6c2

PDB Entry: 2ja6, 4 Å

PDB Description: cpd lesion containing rna polymerase ii elongation complex b

PDB Compounds: (C:) DNA-directed RNA polymerase II 45kda polypeptide

SCOPe Domain Sequences for d2ja6c2:

Sequence; same for both SEQRES and ATOM records:

>d2ja6c2 d.181.1.1 (C:42-172) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
ptlaidsvevetnttvladefiahrlgliplqsmdieqleysrdcfcedhcdkcsvvltl
qafgesesttnvyskdlvivsnlmgrnighpiiqdkegngvlicklrkgqelkltcvakk
giakehakwgp

Timeline for d2ja6c2:

• d2ja6c2 first appeared in SCOP 1.73
  
• d2ja6c2 appears in SCOPe 2.05
  
• d2ja6c2 appears in SCOPe 2.07
  
• d2ja6c2 appears in the current release, SCOPe 2.08