SCOP 1.75: Domain d2j88a1: 2j88 A:10-333

Lineage for d2j88a1 (2j88 A:10-333)

1. Root: SCOP 1.75

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (14 families)

5. Family c.1.8.9: Bee venom hyaluronidase [69387] (1 protein)
   distorted barrel lacks the second strand

6. Protein Bee venom hyaluronidase [69388] (1 species)

7. Species Honeybee (Apis mellifera) [TaxId:7460] [69389] (4 PDB entries)

8. Domain d2j88a1: 2j88 A:10-333 [138135]
   Other proteins in same PDB: d2j88h1, d2j88l1, d2j88l2
   automatically matched to d1fcua_

Details for d2j88a1

PDB Entry: 2j88, 2.6 Å

PDB Description: Hyaluronidase in complex with a monoclonal IgG Fab fragment

PDB Compounds: (A:) hyalurononglucosaminidase

SCOP Domain Sequences for d2j88a1:

Sequence, based on SEQRES records:

>d2j88a1 c.1.8.9 (A:10-333) Bee venom hyaluronidase {Honeybee (Apis mellifera) [TaxId: 7460]}
efnvywnvptfmchkyglrfeevsekygilqnwmdkfrgeeiailydpgmfpallkdpng
nvvarnggvpqlgnltkhlqvfrdhlinqipdksfpgvgvidfeswrpifrqnwaslqpy
kklsvevvrrehpfwddqrveqeakrrfekygqlfmeetlkaakrmrpaanwgyyaypyc
ynltpnqpsaqceattmqendkmswlfesedvllpsvylrwnltsgervglvggrvkeal
riarqmttsrkkvlpyywykyqdrrdtdlsradleatlrkitdlgadgfiiwgssddint
kakclqfreylnnelgpavkrial

Sequence, based on observed residues (ATOM records):

>d2j88a1 c.1.8.9 (A:10-333) Bee venom hyaluronidase {Honeybee (Apis mellifera) [TaxId: 7460]}
efnvywnvptfmchkyglrfeevsekygilqnwmdkfrgeeiailydpgmfpallkvvar
nggvpqlgnltkhlqvfrdhlinqipdksfpgvgvidfeswrpifrqnwaslqpykklsv
evvrrehpfwddqrveqeakrrfekygqlfmeetlkaakrmrpaanwgyyaypycynltp
nqpsaqceattmqendkmswlfesedvllpsvylrwnltsgervglvggrvkealriarq
mttsrkkvlpyywykyqdrrdtdlsradleatlrkitdlgadgfiiwgssddintkakcl
qfreylnnelgpavkrial

Timeline for d2j88a1:

• d2j88a1 first appeared in SCOP 1.73
  
• d2j88a1 is called d2j88a_ in SCOPe 2.01
  
• d2j88a1 appears in the current release, SCOPe 2.08, called d2j88a_