Lineage for d2i5yp1 (2i5y P:86-492)

  1. Root: SCOP 1.75
  2. 849709Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 878722Fold d.172: gp120 core [56501] (1 superfamily)
    unusual fold
  4. 878723Superfamily d.172.1: gp120 core [56502] (1 family) (S)
  5. 878724Family d.172.1.1: gp120 core [56503] (1 protein)
  6. 878725Protein gp120 core [56504] (1 species)
  7. 878726Species Human immunodeficiency virus type 1 [TaxId:11676] [56505] (20 PDB entries)
  8. 878737Domain d2i5yp1: 2i5y P:86-492 [137076]
    Other proteins in same PDB: d2i5yh1, d2i5yh2, d2i5yl1, d2i5yl2, d2i5ym1, d2i5yq1, d2i5yq2, d2i5yr1, d2i5yr2, d2i5ys1
    automatically matched to d1g9ng_
    complexed with bif, mpt, nag, ndg, vlm

Details for d2i5yp1

PDB Entry: 2i5y (more details), 2.2 Å

PDB Description: crystal structure of cd4m47, a scorpion-toxin mimic of cd4, in complex with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody 17b
PDB Compounds: (P:) Exterior membrane glycoprotein(GP120)

SCOP Domain Sequences for d2i5yp1:

Sequence, based on SEQRES records: (download)

>d2i5yp1 d.172.1.1 (P:86-492) gp120 core {Human immunodeficiency virus type 1 [TaxId: 11676]}
lenvtenfnmwknnmveqmhediislwdqslkpcvkltplcvgagscntsvitqacpkvs
fepipihycapagfailkcndkkfngtgpctnvstvqcthgirpvvstqlllngslaeee
ivirsenftnnaktiivqlnesvvinctgaghcnlsktqwentleqiaiklkeqfgnnkt
iifnpssggdpeivthsfncggeffycnstqlftwndtrklnntgrnitlpcrikqiinm
wqevgkamyappirgqircssnitgllltrdggkdtngteifrpgggdmrdnwrselyky
kvvkie

Sequence, based on observed residues (ATOM records): (download)

>d2i5yp1 d.172.1.1 (P:86-492) gp120 core {Human immunodeficiency virus type 1 [TaxId: 11676]}
lenvtenfnmwknnmveqmhediislwdqslkpcvkltplcvgagscntsvitqacpkvs
fepipihycapagfailkcndkkfngtgpctnvstvqcthgirpvvstqlllngslaeee
ivirsenftnnaktiivqlnesvvinctgaghcnlsktqwentleqiaiklkeqfgnnkt
iifnpssggdpeivthsfncggeffycnstqlftwrnitlpcrikqiinmwqevgkamya
ppirgqircssnitgllltrdggkdtngteifrpgggdmrdnwrselykykvvkie

SCOP Domain Coordinates for d2i5yp1:

Click to download the PDB-style file with coordinates for d2i5yp1.
(The format of our PDB-style files is described here.)

Timeline for d2i5yp1: