SCOPe 2.07: Domain d2i2v11: 2i2v 1:3-52

Lineage for d2i2v11 (2i2v 1:3-52)

1. Root: SCOPe 2.07

2. Class g: Small proteins [56992] (98 folds)

3. Fold g.41: Rubredoxin-like [57769] (17 superfamilies)
   metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2

4. Superfamily g.41.8: Zn-binding ribosomal proteins [57829] (8 families)

5. Family g.41.8.6: Ribosomal protein L33p [144203] (1 protein)
   Pfam PF00471; corresponds structurally and functionally to the ribosomal L44e from eukaryota and archaea; metal ion-binding site is lost in most members

6. Protein Ribosomal protein L33p [144204] (3 species)

7. Species Escherichia coli [TaxId:562] [144205] (9 PDB entries)
   Uniprot P0A7N9 1-54

8. Domain d2i2v11: 2i2v 1:3-52 [137008]
   Other proteins in same PDB: d2i2v01, d2i2v21, d2i2v31, d2i2v41, d2i2vc1, d2i2vc2, d2i2vd1, d2i2ve1, d2i2vf1, d2i2vg1, d2i2vg2, d2i2vh1, d2i2vh2, d2i2vi1, d2i2vi2, d2i2vj1, d2i2vk1, d2i2vl1, d2i2vm1, d2i2vn1, d2i2vo1, d2i2vp1, d2i2vq1, d2i2vr1, d2i2vs1, d2i2vt1, d2i2vu1, d2i2vv1, d2i2vw1, d2i2vx1, d2i2vy1, d2i2vz1
   protein/RNA complex; complexed with mg, zn
   protein/RNA complex; complexed with mg, zn

Details for d2i2v11

PDB Entry: 2i2v, 3.22 Å

PDB Description: Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA. This file contains the 50s subunit of one 70s ribosome. The entire crystal structure contains two 70s ribosomes and is described in remark 400.

PDB Compounds: (1:) 50S ribosomal protein L33

SCOPe Domain Sequences for d2i2v11:

Sequence; same for both SEQRES and ATOM records:

>d2i2v11 g.41.8.6 (1:3-52) Ribosomal protein L33p {Escherichia coli [TaxId: 562]}
girekiklvssagtghfytttknkrtkpeklelkkfdpvvrqhviykeak

Timeline for d2i2v11:

• d2i2v11 first appeared in SCOP 1.73
  
• d2i2v11 appears in SCOPe 2.06
  
• d2i2v11 appears in the current release, SCOPe 2.08