Lineage for d2hmka2 (2hmk A:155-446)

  1. Root: SCOP 1.73
  2. 713694Class d: Alpha and beta proteins (a+b) [53931] (334 folds)
  3. 733278Fold d.129: TBP-like [55944] (10 superfamilies)
    beta-alpha-beta(4)-alpha
  4. 733462Superfamily d.129.3: Bet v1-like [55961] (7 families) (S)
    contains a single copy of this fold with a alpha-beta2 insertion after the first helix; there is a cavity between the beta-sheet and the long C-terminal helix
  5. 733518Family d.129.3.3: Ring hydroxylating alpha subunit catalytic domain [55969] (6 proteins)
    Pfam PF00848; contains a few insertion and C-terminal extension compared with Bet v1
  6. 733533Protein Naphthalene 1,2-dioxygenase alpha subunit, C-domain [55970] (2 species)
  7. 733534Species Pseudomonas putida [TaxId:303] [55971] (16 PDB entries)
  8. 733539Domain d2hmka2: 2hmk A:155-446 [136589]
    Other proteins in same PDB: d2hmka1, d2hmkb1
    automatically matched to d1o7ga2
    complexed with edo, fe, fes, pey, so4; mutant

Details for d2hmka2

PDB Entry: 2hmk (more details), 1.65 Å

PDB Description: crystal structure of naphthalene 1,2-dioxygenase bound to phenanthrene
PDB Compounds: (A:) Naphthalene 1,2-dioxygenase alpha subunit

SCOP Domain Sequences for d2hmka2:

Sequence; same for both SEQRES and ATOM records: (download)

>d2hmka2 d.129.3.3 (A:155-446) Naphthalene 1,2-dioxygenase alpha subunit, C-domain {Pseudomonas putida [TaxId: 303]}
eapplmdylgdaawylepmfkhsgglelvgppgkvvikanwkapaenfvgdayhvgwtha
sslrsgesifsslagnaalppegaglqmtskygsgmgvlwdgysgvhsadlvpelmafgg
akqerlnkeigdvrariyrshlnctvfpnnsmltcsgvfkvwnpidanttevwtyaivek
dmpedlkrrladsvqrtfgpagfwesddndnmetasqngkkyqsrdsdllsnlgfgedvy
gdavypgvvgksaigetsyrgfyrayqahvsssnwaefehasstwhteltkt

SCOP Domain Coordinates for d2hmka2:

Click to download the PDB-style file with coordinates for d2hmka2.
(The format of our PDB-style files is described here.)

Timeline for d2hmka2:

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Domains from same chain:
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d2hmka1
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Domains from other chains:
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d2hmkb1