SCOPe 2.03: Domain d2gyc11: 2gyc 1:1-52

Lineage for d2gyc11 (2gyc 1:1-52)

1. Root: SCOPe 2.03

2. Class g: Small proteins [56992] (90 folds)

3. Fold g.41: Rubredoxin-like [57769] (17 superfamilies)
   metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2

4. Superfamily g.41.8: Zn-binding ribosomal proteins [57829] (8 families)

5. Family g.41.8.6: Ribosomal protein L33p [144203] (1 protein)
   Pfam PF00471; corresponds structurally and functionally to the ribosomal L44e from eukaryota and archaea; metal ion-binding site is lost in most members

6. Protein Ribosomal protein L33p [144204] (3 species)

7. Species Escherichia coli [TaxId:562] [144205] (9 PDB entries)
   Uniprot P0A7N9 1-54

8. Domain d2gyc11: 2gyc 1:1-52 [135845]
   Other proteins in same PDB: d2gyc31, d2gyc32, d2gyc51, d2gyc52, d2gycb1, d2gycc1, d2gycd1, d2gycf1, d2gycf2, d2gycg1, d2gycg2, d2gych1, d2gyci1, d2gycj1, d2gyck1, d2gycm1, d2gycn1, d2gyco1, d2gycq1, d2gycs1, d2gyct1, d2gycu1, d2gycw1, d2gycx1
   automatically matched to 2AW4 1:1-54
   protein/RNA complex

Details for d2gyc11

PDB Entry: 2gyc, 15 Å

PDB Description: Structure of the 50S subunit of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

PDB Compounds: (1:) 50S ribosomal protein L33

SCOPe Domain Sequences for d2gyc11:

Sequence; same for both SEQRES and ATOM records:

>d2gyc11 g.41.8.6 (1:1-52) Ribosomal protein L33p {Escherichia coli [TaxId: 562]}
akgirekiklvssagtghfytttknkrtkpeklelkkfdpvvrqhviykeak

Timeline for d2gyc11:

• d2gyc11 first appeared in SCOP 1.73
  
• d2gyc11 appears in SCOPe 2.02
  
• d2gyc11 appears in SCOPe 2.04
  
• d2gyc11 appears in the current release, SCOPe 2.08