Lineage for d2by1a3 (2by1 A:111-530)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2826025Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2829818Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2829819Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
    members of the family may contain various insert subdomains
    in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain
  6. 2830167Protein Glycosyltrehalose trehalohydrolase, central domain [51468] (2 species)
    contains an additional N-terminal domain
  7. 2830168Species Deinococcus radiodurans [TaxId:1299] [141769] (9 PDB entries)
    Uniprot Q9RX51 111-528
  8. 2830175Domain d2by1a3: 2by1 A:111-530 [129459]
    Other proteins in same PDB: d2by1a1, d2by1a2
    automated match to d2bhua3
    complexed with bme, glc, mg, trs

    has additional subdomain(s) that are not in the common domain

Details for d2by1a3

PDB Entry: 2by1 (more details), 1.55 Å

PDB Description: is radiation damage dependent on the dose-rate used during macromolecular crystallography data collection
PDB Compounds: (A:) maltooligosyltrehalose trehalohydrolase

SCOPe Domain Sequences for d2by1a3:

Sequence, based on SEQRES records: (download)

>d2by1a3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]}
tfdwtdadwhgikladcvfyevhvgtftpegtyraaaeklpylkelgvtaiqvmplaafd
gqrgwgydgaafyapyapygrpedlmalvdaahrlglgvfldvvynhfgpsgnylssyap
syftdrfssawgmgldyaephmrryvtgnarmwlrdyhfdglrldatpymtddsethilt
elaqeihelggthlllaedhrnlpdlvtvnhldgiwtddfhhetrvtltgeqegyyagyr
ggaealaytirrgwryegqfwavkgeeherghpsdaleapnfvyciqnhdqignrplger
lhqsdgvtlheyrgaaallltlpmtpllfqgqewaastpfqffsdhagelgqavsegrkk
efggfsgfsgedvpdpqaeqtflnsklnwaereggehartlrlyrdllrlrredpvlhnr

Sequence, based on observed residues (ATOM records): (download)

>d2by1a3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]}
tfdwtdadwhgikladcvfyevhvgtftpegtyraaaeklpylkelgvtaiqvmplaafd
gqrgwgydgaafyapyapygrpedlmalvdaahrlglgvfldvvynhfgpsgnylssyap
syftdrfssawgmgldyaephmrryvtgnarmwlrdyhfdglrldatpymtddsethilt
elaqeihelggthlllaedhrnlpdlvtvnhldgiwtddfhhetrvtltgeqegyyagyr
ggaealaytirrgwryegqfwavkgeeherghpsdaleapnfvyciqnhdqignrplger
lhqsdgvtlheyrgaaallltlpmtpllfqgqewaastpfqffsdhagelgqavsegrkk
efdvpdpqaeqtflnsklnwaereggehartlrlyrdllrlrredpvlhnr

SCOPe Domain Coordinates for d2by1a3:

Click to download the PDB-style file with coordinates for d2by1a3.
(The format of our PDB-style files is described here.)

Timeline for d2by1a3: