SCOPe 2.08: Domain d1zzma1: 1zzm A:1-259

Lineage for d1zzma1 (1zzm A:1-259)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.9: Metallo-dependent hydrolases [51556] (19 families)
   the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
   has transition metal ions bound inside the barrel

5. Family c.1.9.12: TatD Mg-dependent DNase-like [82267] (5 proteins)
   automatically mapped to Pfam PF01026

6. Protein Putative deoxyribonuclease YjjV [141813] (1 species)

7. Species Escherichia coli [TaxId:562] [141814] (1 PDB entry)
   Uniprot P39408 1-259

8. Domain d1zzma1: 1zzm A:1-259 [125911]
   complexed with p33, zn

Details for d1zzma1

PDB Entry: 1zzm, 1.8 Å

PDB Description: crystal structure of yjjv, tatd homolog from escherichia coli k12, at 1.8 a resolution

PDB Compounds: (A:) putative deoxyribonuclease yjjV

SCOPe Domain Sequences for d1zzma1:

Sequence; same for both SEQRES and ATOM records:

>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]}
micrfidthchfdfppfsgdeeaslqraaqagvgkiivpateaenfarvlalaenyqply
aalglhpgmlekhsdvsleqlqqalerrpakvvavgeigldlfgddpqferqqwlldeql
klakrydlpvilhsrrthdklamhlkrhdlprtgvvhgfsgslqqaerfvqlgykigvgg
tityprasktrdviaklplasllletdapdmplngfqgqpnrpeqaarvfavlcelrrep
adeiaqallnntytlfnvp

Timeline for d1zzma1:

• d1zzma1 first appeared in SCOP 1.73
  
• d1zzma1 appears in SCOPe 2.07