SCOPe 2.08: Domain d1z41a1: 1z41 A:2-338

Lineage for d1z41a1 (1z41 A:2-338)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.4: FMN-linked oxidoreductases [51395] (2 families)

5. Family c.1.4.1: FMN-linked oxidoreductases [51396] (19 proteins)

6. Protein NADPH dehydrogenase NamA [141763] (1 species)
   OYE homolog

7. Species Bacillus subtilis [TaxId:1423] [141764] (4 PDB entries)
   Uniprot P54550 1-337
   probable NADH-dependent flavin oxidoreductase YqjM

8. Domain d1z41a1: 1z41 A:2-338 [124421]
   complexed with fmn, so4
   has additional insertions and/or extensions that are not grouped together

Details for d1z41a1

PDB Entry: 1z41, 1.3 Å

PDB Description: Crystal structure of oxidized YqjM from Bacillus subtilis

PDB Compounds: (A:) Probable NADH-dependent flavin oxidoreductase yqjM

SCOPe Domain Sequences for d1z41a1:

Sequence; same for both SEQRES and ATOM records:

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}
arklftpitikdmtlknrivmspmcmysshekdgkltpfhmahyisraigqvgliiveas
avnpqgritdqdlgiwsdehiegfaklteqvkeqgskigiqlahagrkaelegdifapsa
iafdeqsatpvemsaekvketvqefkqaaarakeagfdvieihaahgyliheflsplsnh
rtdeyggspenryrflreiidevkqvwdgplfvrvsasdytdkgldiadhigfakwmkeq
gvdlidcssgalvhadinvfpgyqvsfaekireqadmatgavgmitdgsmaeeilqngra
dlifigrellrdpffartaakqlnteipapvqyergw

Timeline for d1z41a1:

• d1z41a1 first appeared in SCOP 1.73
  
• d1z41a1 appears in SCOPe 2.07