SCOPe 2.02: Domain d1ynrd_: 1ynr D:

Lineage for d1ynrd_ (1ynr D:)

1. Root: SCOPe 2.02

2. Class a: All alpha proteins [46456] (284 folds)

3. Fold a.3: Cytochrome c [46625] (1 superfamily)
   core: 3 helices; folded leaf, opened

4. Superfamily a.3.1: Cytochrome c [46626] (9 families)
   covalently-bound heme completes the core

5. Family a.3.1.1: monodomain cytochrome c [46627] (16 proteins)

6. Protein Cytochrome c552 [46636] (5 species)

7. Species Hydrogenobacter thermophilus [TaxId:940] [46640] (4 PDB entries)

8. Domain d1ynrd_: 1ynr D: [123753]
   automated match to d1ayg__
   complexed with hec, mpd, so4

Details for d1ynrd_

PDB Entry: 1ynr, 2 Å

PDB Description: Crystal structure of the cytochrome c-552 from Hydrogenobacter thermophilus at 2.0 resolution

PDB Compounds: (D:) Cytochrome c-552

SCOPe Domain Sequences for d1ynrd_:

Sequence; same for both SEQRES and ATOM records:

>d1ynrd_ a.3.1.1 (D:) Cytochrome c552 {Hydrogenobacter thermophilus [TaxId: 940]}
neqlakqkgcmachdlkakkvgpayadvakkyagrkdavdylagkikkggsgvwgsvpmp
pqnvtdaeakqlaqwilsi

Timeline for d1ynrd_:

• d1ynrd_ first appeared in SCOP 1.73, called d1ynrd1
  
• d1ynrd_ appears in SCOPe 2.01
  
• d1ynrd_ appears in SCOPe 2.03
  
• d1ynrd_ appears in the current release, SCOPe 2.08