SCOP 1.73: Domain d1ymyb2: 1ymy B:54-350

Lineage for d1ymyb2 (1ymy B:54-350)

1. Root: SCOP 1.73

2. Class c: Alpha and beta proteins (a/b) [51349] (141 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.9: Metallo-dependent hydrolases [51556] (15 families)
   the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
   has transition metal ions bound inside the barrel

5. Family c.1.9.10: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain [82261] (1 protein)

6. Protein N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain [82262] (3 species)

7. Species Escherichia coli [TaxId:562] [141808] (2 PDB entries)

8. Domain d1ymyb2: 1ymy B:54-350 [123711]
   Other proteins in same PDB: d1ymya1, d1ymyb1
   automatically matched to 1YMY A:54-350

Details for d1ymyb2

PDB Entry: 1ymy, 2.6 Å

PDB Description: crystal structure of the n-acetylglucosamine-6-phosphate deacetylase from escherichia coli k12

PDB Compounds: (B:) N-acetylglucosamine-6-phosphate deacetylase

SCOP Domain Sequences for d1ymyb2:

Sequence, based on SEQRES records:

>d1ymyb2 c.1.9.10 (B:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]}
gfidvqlngcggvqfndtaeavsvetleimqkaneksgctnylptlittsdelmkqgvrv
mreylakhpnqalglhlegpwlnlvkkgthnpnfvrkpdaalvdflcenadvitkvtlap
emvpaevisklanagivvsaghsnatlkeakagfragitfathlynampyitgrepglag
aildeadiycgiiadglhvdyanirnakrlkgdklclvtdatapaganieqfifagktiy
yrnglcvdengtlsgssltmiegvrnlvehcgialdevlrmatlyparaigvekrlg

Sequence, based on observed residues (ATOM records):

>d1ymyb2 c.1.9.10 (B:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]}
gfidvqlngcggvqfavsvetleimqkaneksgctnylptlittsdelmkqgvrvmreyl
akhpnqalglhlegpwlnlaalvdflcenadvitkvtlapemvpaevisklanagivvsa
ghsnatlkeakagfragitfathlynampyitgrepglagaildeadiycgiiadglhvd
yanirnakrlkgdklclvtdatagssltmiegvrnlvehcgialdevlrmatlyparaig
vekrlg

Timeline for d1ymyb2:

• d1ymyb2 is new in SCOP 1.73
  
• d1ymyb2 appears in SCOP 1.75
  
• d1ymyb2 appears in the current release, SCOPe 2.08