SCOPe 2.04: Domain d1ykwa1: 1ykw A:146-428

Lineage for d1ykwa1 (1ykw A:146-428)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.14: RuBisCo, C-terminal domain [51649] (2 families)
   automatically mapped to Pfam PF00016

5. Family c.1.14.1: RuBisCo, large subunit, C-terminal domain [51650] (2 proteins)
   N-terminal domain is alpha+beta

6. Protein Ribulose 1,5-bisphosphate carboxylase-oxygenase [51651] (12 species)

7. Species Chlorobium tepidum [TaxId:1097] [117389] (2 PDB entries)
   Uniprot Q8KBL4 1-428

8. Domain d1ykwa1: 1ykw A:146-428 [123565]
   Other proteins in same PDB: d1ykwa2, d1ykwb2

Details for d1ykwa1

PDB Entry: 1ykw, 2 Å

PDB Description: crystal structure of a novel rubisco-like protein from the green sulfur bacterium chlorobium tepidum

PDB Compounds: (A:) RuBisCO-like protein

SCOPe Domain Sequences for d1ykwa1:

Sequence; same for both SEQRES and ATOM records:

>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}
egpkfgieglrdilnahgrpiffgvvkpniglspgefaeiayqswlggldiakddemlad
vtwssieeraahlgkarrkaeaetgepkiylanitdevdslmekhdvavrnganallina
lpvglsavrmlsnytqvplighfpfiasfsrmekygihskvmtklqrlagldavimpgfg
drvmtpeeevlenviectkpmgrikpclpvpggsdsaltlqtvyekvgnvdfgfvpgrgv
fghpmgpkagaksirqaweaieqgisietwaethpelqamvdq

Timeline for d1ykwa1:

• d1ykwa1 first appeared in SCOP 1.73
  
• d1ykwa1 appears in SCOPe 2.03
  
• d1ykwa1 appears in SCOPe 2.05
  
• d1ykwa1 appears in the current release, SCOPe 2.08