SCOPe 2.08: Domain d1vcgc_: 1vcg C:

Lineage for d1vcgc_ (1vcg C:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.4: FMN-linked oxidoreductases [51395] (2 families)

5. Family c.1.4.1: FMN-linked oxidoreductases [51396] (19 proteins)

6. Protein automated matches [190228] (20 species)
   not a true protein

7. Species Thermus thermophilus [TaxId:274] [254915] (1 PDB entry)

8. Domain d1vcgc_: 1vcg C: [119978]
   automated match to d3dh7a1
   complexed with fmn

Details for d1vcgc_

PDB Entry: 1vcg, 3.02 Å

PDB Description: Crystal Structure of IPP isomerase at P43212

PDB Compounds: (C:) Isopentenyl-diphosphate delta-isomerase

SCOPe Domain Sequences for d1vcgc_:

Sequence, based on SEQRES records:

>d1vcgc_ c.1.4.1 (C:) automated matches {Thermus thermophilus [TaxId: 274]}
khleaclegevayqktttglegfrlryqalaglalsevdlttpflgktlkapfligamtg
geengerinlalaeaaealgvgmmlgsgrillerpealrsfrvrkvapkallianlglaq
lrrygrddllrlvemleadalafhvnplqeavqrgdtdfrglverlaellplpfpvmvke
vghglsreaalalrdlplaavdvagaggtswarveewvrfgevrhpelceigiptarail
evrevlphlplvasggvytgtdgakalalgadllavarpllrpalegaervaawigdyle
elrtalfaigarnpkeargrverv

Sequence, based on observed residues (ATOM records):

>d1vcgc_ c.1.4.1 (C:) automated matches {Thermus thermophilus [TaxId: 274]}
khleaclegevayqktttglegfrlryqalaglalsevdlttpflgktlkapfligamte
rinlalaeaaealgvgmmlgsgrillerpealrrvrkvapkallianlglaqlrrygrdd
llrlvemleadalafhvnplqeavqrgdtdfrglverlaellplpfpvmvkevghglsre
aalalrdlplaavdvagaggtswarveewvrfgevrhpelceigiptarailevrevlph
lplvasggvytgtdgakalalgadllavarpllrpalegaervaawigdyleelrtalfa
igarnpkeargrverv

Timeline for d1vcgc_:

• d1vcgc_ first appeared in SCOP 1.73, called d1vcgc1
  
• d1vcgc_ appears in SCOPe 2.07