SCOPe 2.08: Domain d1vcfb_: 1vcf B:

Lineage for d1vcfb_ (1vcf B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.4: FMN-linked oxidoreductases [51395] (2 families)

5. Family c.1.4.1: FMN-linked oxidoreductases [51396] (19 proteins)

6. Protein Isopentenyl-diphosphate delta-isomerase [89454] (3 species)

7. Species Thermus thermophilus [TaxId:274] [141760] (1 PDB entry)
   Uniprot Q53W52 23-332

8. Domain d1vcfb_: 1vcf B: [119975]
   automated match to d1vcfa1
   complexed with cd, fmn
   has additional insertions and/or extensions that are not grouped together

Details for d1vcfb_

PDB Entry: 1vcf, 2.6 Å

PDB Description: Crystal Structure of IPP isomerase at I422

PDB Compounds: (B:) Isopentenyl-diphosphate delta-isomerase

SCOPe Domain Sequences for d1vcfb_:

Sequence, based on SEQRES records:

>d1vcfb_ c.1.4.1 (B:) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}
ktttglegfrlryqalaglalsevdlttpflgktlkapfligamtggeengerinlalae
aaealgvgmmlgsgrillerpealrsfrvrkvapkallianlglaqlrrygrddllrlve
mleadalafhvnplqeavqrgdtdfrglverlaellplpfpvmvkevghglsreaalalr
dlplaavdvagaggtswarveewvrfgevrhpelceigiptarailevrevlphlplvas
ggvytgtdgakalalgadllavarpllrpalegaervaawigdyleelrtalfaigarnp
keargrverv

Sequence, based on observed residues (ATOM records):

>d1vcfb_ c.1.4.1 (B:) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}
ktttglegfrlryqalaglalsevdlttpflgktlkapfligamtggeengerinlalae
aaealgvgmmlgsgrillerpealrsfrvrkvapkallianlglaqlrrygrddllrlve
mleadalafhvnplqeavqrgdtdfrglverlaellplpfpvmvkevghglsreaalalr
dlplaavdvagaggtswarvelceigiptarailevrevlphlplvasggvytgtdgaka
lalgadllavarpllrpalegaervaawigdyleelrtalfaigarnpkeargrverv

Timeline for d1vcfb_:

• d1vcfb_ first appeared in SCOP 1.73, called d1vcfb1
  
• d1vcfb_ appears in SCOPe 2.07