SCOPe 2.05: Protein: N-acylamino acid racemase

Lineage for Protein: N-acylamino acid racemase

Root: SCOPe 2.05
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.11: Enolase C-terminal domain-like [51604] (3 families)

binds metal ion (magnesium or manganese) in conserved site inside barrel
N-terminal alpha+beta domain is common to this superfamily

Family c.1.11.2: D-glucarate dehydratase-like [51609] (15 proteins)
Protein N-acylamino acid racemase [110372] (4 species)

Species:

Amycolatopsis sp. [TaxId:37632] [110373] (4 PDB entries)
Uniprot Q44244 # similar activity to a remotely related O-succinylbenzoate synthase from E. coli
1. Domains for 1sja:
  1. Domain d1sjaa1: 1sja A:126-368 [105608]
    Other proteins in same PDB: d1sjaa2, d1sjab2, d1sjac2, d1sjad2
    complexed with ame, mg
  2. Domain d1sjab1: 1sja B:126-368 [105610]
    Other proteins in same PDB: d1sjaa2, d1sjab2, d1sjac2, d1sjad2
    complexed with ame, mg
  3. Domain d1sjac1: 1sja C:126-368 [105612]
    Other proteins in same PDB: d1sjaa2, d1sjab2, d1sjac2, d1sjad2
    complexed with ame, mg
  4. Domain d1sjad1: 1sja D:126-368 [105614]
    Other proteins in same PDB: d1sjaa2, d1sjab2, d1sjac2, d1sjad2
    complexed with ame, mg
2. Domains for 1sjb:
  1. Domain d1sjba1: 1sjb A:126-367 [105616]
    Other proteins in same PDB: d1sjba2, d1sjbb2, d1sjbc2, d1sjbd2
    complexed with mg, osb
  2. Domain d1sjbb1: 1sjb B:126-368 [105618]
    Other proteins in same PDB: d1sjba2, d1sjbb2, d1sjbc2, d1sjbd2
    complexed with mg, osb
  3. Domain d1sjbc1: 1sjb C:126-367 [105620]
    Other proteins in same PDB: d1sjba2, d1sjbb2, d1sjbc2, d1sjbd2
    complexed with mg, osb
  4. Domain d1sjbd1: 1sjb D:126-368 [105622]
    Other proteins in same PDB: d1sjba2, d1sjbb2, d1sjbc2, d1sjbd2
    complexed with mg, osb
3. Domains for 1sjc:
  1. Domain d1sjca1: 1sjc A:126-367 [105624]
    Other proteins in same PDB: d1sjca2, d1sjcb2, d1sjcc2, d1sjcd2
    complexed with mg, smg
  2. Domain d1sjcb1: 1sjc B:126-368 [105626]
    Other proteins in same PDB: d1sjca2, d1sjcb2, d1sjcc2, d1sjcd2
    complexed with mg, smg
  3. Domain d1sjcc1: 1sjc C:126-367 [105628]
    Other proteins in same PDB: d1sjca2, d1sjcb2, d1sjcc2, d1sjcd2
    complexed with mg, smg
  4. Domain d1sjcd1: 1sjc D:126-368 [105630]
    Other proteins in same PDB: d1sjca2, d1sjcb2, d1sjcc2, d1sjcd2
    complexed with mg, smg
4. Domains for 1sjd:
  1. Domain d1sjda1: 1sjd A:126-367 [105632]
    Other proteins in same PDB: d1sjda2, d1sjdb2, d1sjdc2, d1sjdd2
    complexed with npg
  2. Domain d1sjdb1: 1sjd B:126-368 [105634]
    Other proteins in same PDB: d1sjda2, d1sjdb2, d1sjdc2, d1sjdd2
    complexed with npg
  3. Domain d1sjdc1: 1sjd C:126-367 [105636]
    Other proteins in same PDB: d1sjda2, d1sjdb2, d1sjdc2, d1sjdd2
    complexed with npg
  4. Domain d1sjdd1: 1sjd D:126-367 [105638]
    Other proteins in same PDB: d1sjda2, d1sjdb2, d1sjdc2, d1sjdd2
    complexed with npg
Deinococcus radiodurans [TaxId:1299] [110374] (4 PDB entries)
Uniprot Q9RYA6
1. Domains for 1r0m:
  1. Domain d1r0ma1: 1r0m A:133-375 [104747]
    Other proteins in same PDB: d1r0ma2, d1r0mb2, d1r0mc2, d1r0md2
  2. Domain d1r0mb1: 1r0m B:133-375 [104749]
    Other proteins in same PDB: d1r0ma2, d1r0mb2, d1r0mc2, d1r0md2
  3. Domain d1r0mc1: 1r0m C:133-375 [104751]
    Other proteins in same PDB: d1r0ma2, d1r0mb2, d1r0mc2, d1r0md2
  4. Domain d1r0md1: 1r0m D:133-375 [104753]
    Other proteins in same PDB: d1r0ma2, d1r0mb2, d1r0mc2, d1r0md2
2. Domains for 1xpy:
  1. Domain d1xpya1: 1xpy A:133-375 [115810]
    Other proteins in same PDB: d1xpya2, d1xpyb2, d1xpyc2, d1xpyd2
    complexed with mg, nlq
  2. Domain d1xpyb1: 1xpy B:133-375 [115812]
    Other proteins in same PDB: d1xpya2, d1xpyb2, d1xpyc2, d1xpyd2
    complexed with mg, nlq
  3. Domain d1xpyc1: 1xpy C:133-375 [115814]
    Other proteins in same PDB: d1xpya2, d1xpyb2, d1xpyc2, d1xpyd2
    complexed with mg, nlq
  4. Domain d1xpyd1: 1xpy D:133-375 [115816]
    Other proteins in same PDB: d1xpya2, d1xpyb2, d1xpyc2, d1xpyd2
    complexed with mg, nlq
3. Domains for 1xs2:
  1. Domain d1xs2a1: 1xs2 A:133-375 [115898]
    Other proteins in same PDB: d1xs2a2, d1xs2b2, d1xs2c2, d1xs2d2
    complexed with mg
  2. Domain d1xs2b1: 1xs2 B:133-375 [115900]
    Other proteins in same PDB: d1xs2a2, d1xs2b2, d1xs2c2, d1xs2d2
    complexed with mg
  3. Domain d1xs2c1: 1xs2 C:133-375 [115902]
    Other proteins in same PDB: d1xs2a2, d1xs2b2, d1xs2c2, d1xs2d2
    complexed with mg
  4. Domain d1xs2d1: 1xs2 D:133-375 [115904]
    Other proteins in same PDB: d1xs2a2, d1xs2b2, d1xs2c2, d1xs2d2
    complexed with mg
4. Domains for 2fkp:
  1. Domain d2fkpa1: 2fkp A:133-375 [133665]
    Other proteins in same PDB: d2fkpa2, d2fkpb1, d2fkpc1, d2fkpd1
    mutant
  2. Domain d2fkpb2: 2fkp B:133-375 [197920]
    Other proteins in same PDB: d2fkpa2, d2fkpb1, d2fkpc1, d2fkpd1
    automated match to d2fkpa1
    mutant
  3. Domain d2fkpc2: 2fkp C:133-375 [197922]
    Other proteins in same PDB: d2fkpa2, d2fkpb1, d2fkpc1, d2fkpd1
    automated match to d2fkpa1
    mutant
  4. Domain d2fkpd2: 2fkp D:133-375 [197924]
    Other proteins in same PDB: d2fkpa2, d2fkpb1, d2fkpc1, d2fkpd1
    automated match to d2fkpa1
    mutant
Enterococcus faecalis [TaxId:1351] [117382] (1 PDB entry)
Uniprot Q838J7; EF0450; protein assignment by sequence similarity
- Domains for 1wue:
  1. Domain d1wuea1: 1wue A:1127-1367 [114892]
    Other proteins in same PDB: d1wuea2, d1wueb2
    Structural genomics target
  2. Domain d1wueb1: 1wue B:2127-2367 [114894]
    Other proteins in same PDB: d1wuea2, d1wueb2
    Structural genomics target
Listeria innocua [TaxId:1642] [117383] (1 PDB entry)
Uniprot Q927X3; Lin2664; protein assignment by sequence similarity
- Domains for 1wuf:
  1. Domain d1wufa1: 1wuf A:1127-1370 [114896]
    Other proteins in same PDB: d1wufa2, d1wufb2
    Structural genomics target
    complexed with mg
  2. Domain d1wufb1: 1wuf B:2127-2370 [114898]
    Other proteins in same PDB: d1wufa2, d1wufb2
    Structural genomics target
    complexed with mg

More info for Protein N-acylamino acid racemase from c.1.11.2: D-glucarate dehydratase-like

Timeline for Protein N-acylamino acid racemase from c.1.11.2: D-glucarate dehydratase-like:

Protein N-acylamino acid racemase from c.1.11.2: D-glucarate dehydratase-like first appeared in SCOP 1.69
Protein N-acylamino acid racemase from c.1.11.2: D-glucarate dehydratase-like appears in SCOPe 2.04
Protein N-acylamino acid racemase from c.1.11.2: D-glucarate dehydratase-like appears in SCOPe 2.06
Protein N-acylamino acid racemase from c.1.11.2: D-glucarate dehydratase-like appears in the current release, SCOPe 2.08