SCOPe 2.01: Domain d1wdaa2: 1wda A:4-112

Lineage for d1wdaa2 (1wda A:4-112)

1. Root: SCOPe 2.01

2. Class b: All beta proteins [48724] (174 folds)

3. Fold b.6: Cupredoxin-like [49502] (2 superfamilies)
   sandwich; 7 strands in 2 sheets, greek-key
   variations: some members have additional 1-2 strands

4. Superfamily b.6.1: Cupredoxins [49503] (8 families)
   contains copper-binding site

5. Family b.6.1.6: Peptidylarginine deiminase Pad4, N-terminal domain [110107] (1 protein)
   probably related to cupredoxins but lacking the metal-binding site

6. Protein Peptidylarginine deiminase Pad4, N-terminal domain [110108] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [110109] (7 PDB entries)
   Uniprot Q9UM07

8. Domain d1wdaa2: 1wda A:4-112 [109244]
   Other proteins in same PDB: d1wdaa1, d1wdaa3
   complexed with bag, ca, so4

Details for d1wdaa2

PDB Entry: 1wda, 2.3 Å

PDB Description: crystal structure of human peptidylarginine deiminase type4 (pad4) in complex with benzoyl-l-arginine amide

PDB Compounds: (A:) Protein-arginine deiminase type IV

SCOPe Domain Sequences for d1wdaa2:

Sequence, based on SEQRES records:

>d1wdaa2 b.6.1.6 (A:4-112) Peptidylarginine deiminase Pad4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
gtlirvtpeqpthavcvlgtltqldicssapedctsfsinaspgvvvdiahsppakkkst
gsstwpldpgvevtltmkaasgstgdqkvqisyygpktppvkallylta

Sequence, based on observed residues (ATOM records):

>d1wdaa2 b.6.1.6 (A:4-112) Peptidylarginine deiminase Pad4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
gtlirvtpeqpthavcvlgtltqldicssapetsfsinaspgvvvditwpldpgvevtlt
mkaasgstgdqkvqisyygpktppvkallylta

Timeline for d1wdaa2:

• d1wdaa2 first appeared in SCOP 1.69
  
• d1wdaa2 appears in SCOP 1.75
  
• d1wdaa2 appears in SCOPe 2.02
  
• d1wdaa2 appears in the current release, SCOPe 2.08