Lineage for d1wd9a3 (1wd9 A:294-663)

  1. Root: SCOP 1.71
  2. 595667Class d: Alpha and beta proteins (a+b) [53931] (286 folds)
  3. 610438Fold d.126: Pentein, beta/alpha-propeller [55908] (1 superfamily)
    duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis
  4. 610439Superfamily d.126.1: Pentein [55909] (6 families) (S)
  5. 610481Family d.126.1.5: Peptidylarginine deiminase Pad4, catalytic C-terminal domain [111152] (1 protein)
    # functionally related to the amidinotransferase, similar active sites
  6. 610482Protein Peptidylarginine deiminase Pad4, catalytic C-terminal domain [111153] (1 species)
  7. 610483Species Human (Homo sapiens) [TaxId:9606] [111154] (3 PDB entries)
  8. 610485Domain d1wd9a3: 1wd9 A:294-663 [109242]
    Other proteins in same PDB: d1wd9a1, d1wd9a2
    complexed with ca, so4; mutant

Details for d1wd9a3

PDB Entry: 1wd9 (more details), 2.6 Å

PDB Description: calcium bound form of human peptidylarginine deiminase type4 (pad4)

SCOP Domain Sequences for d1wd9a3:

Sequence, based on SEQRES records: (download)

>d1wd9a3 d.126.1.5 (A:294-663) Peptidylarginine deiminase Pad4, catalytic C-terminal domain {Human (Homo sapiens)}
apwimtpntqppqevyacsifenedflksvttlamkakcklticpeeenmddqwmqdeme
igyiqaphktlpvvfdsprnrglkefpikrvmgpdfgyvtrgpqtggisgldsfgnlevs
ppvtvrgkeyplgrilfgdscypsndsrqmhqalqdflsaqqvqapvklysdwlsvghvd
eflsfvpapdrkgfrlllasprscyklfqeqqneghgeallfegikkkkqqkiknilsnk
tlrehnsfvercidwnrellkrelglaesdiidipqlfklkefskaeaffpnmvnmlvlg
khlgipkpfgpvingrccleekvcslleplglqctfindfftyhirhgevhagtnvrrkp
fsfkwwnmvp

Sequence, based on observed residues (ATOM records): (download)

>d1wd9a3 d.126.1.5 (A:294-663) Peptidylarginine deiminase Pad4, catalytic C-terminal domain {Human (Homo sapiens)}
apwimtpntqppqevyacsedflksvttlamkakcklticpqwmqdemeigyiqaphktl
pvvfdsprnrglkefpikrvmgpdfgyvtrgpqtggisgldsfgnlevsppvtvrgkeyp
lgrilfgdscypsndsrqmhqalqdflsaqqvqapvklysdwlsvghvdeflsfvpapdr
kgfrlllasprscyklfqeqqneghgeallfqqkiknilsnktlrehnsfvercidwnre
llkrelglaesdiidipqlfklkefskaeaffpnmvnmlvlgkhlgipkpfgpvingrcc
leekvcslleplglqctfindfftyhirhgevhagtnvrrkpfsfkwwnmvp

SCOP Domain Coordinates for d1wd9a3:

Click to download the PDB-style file with coordinates for d1wd9a3.
(The format of our PDB-style files is described here.)

Timeline for d1wd9a3: