SCOPe 2.06: Domain d1vfha2: 1vfh A:13-249

Lineage for d1vfha2 (1vfh A:13-249)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.6: PLP-binding barrel [51419] (2 families)
   circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand

5. Family c.1.6.1: Alanine racemase-like, N-terminal domain [51420] (4 proteins)

6. Protein Alanine racemase [51421] (3 species)

7. Species Streptomyces lavendulae [TaxId:1914] [110346] (3 PDB entries)
   Uniprot Q65YW7

8. Domain d1vfha2: 1vfh A:13-249 [108575]
   Other proteins in same PDB: d1vfha1, d1vfha3
   complexed with plp

Details for d1vfha2

PDB Entry: 1vfh, 2 Å

PDB Description: Crystal structure of alanine racemase from D-cycloserine producing Streptomyces lavendulae

PDB Compounds: (A:) alanine racemase

SCOPe Domain Sequences for d1vfha2:

Sequence; same for both SEQRES and ATOM records:

>d1vfha2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces lavendulae [TaxId: 1914]}
dldavranvralraraprsalmavvksnayghgavpcaraaqeagaawlgtatpeealel
raagiqgrimcwlwtpggpwreaietdidvsvsgmwaldevraaaraagrtariqlkadt
glgrngcqpadwaelvgaavaaqaegtvqvtgvwshfacadepghpsirlqldafrdmla
yaekegvdpevrhianspatltlpethfdlvrtglavygvspspelgtpaqlglrpa

Timeline for d1vfha2:

• d1vfha2 first appeared in SCOP 1.69
  
• d1vfha2 appears in SCOPe 2.05
  
• d1vfha2 appears in SCOPe 2.07
  
• d1vfha2 appears in the current release, SCOPe 2.08