SCOPe 2.08: Domain d1ukvy_: 1ukv Y:

Lineage for d1ukvy_ (1ukv Y:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (27 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.8: G proteins [52592] (81 proteins)
   core: mixed beta-sheet of 6 strands, order 231456; strand 2 is antiparallel to the rest

6. Protein GTPase Ytp1 [110544] (1 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [110545] (2 PDB entries)
   Uniprot P01123

8. Domain d1ukvy_: 1ukv Y: [107918]
   Other proteins in same PDB: d1ukvg1, d1ukvg2, d1ukvg3
   complexed with gdp, ger, mg

Details for d1ukvy_

PDB Entry: 1ukv, 1.5 Å

PDB Description: Structure of RabGDP-dissociation inhibitor in complex with prenylated YPT1 GTPase

PDB Compounds: (Y:) GTP-binding protein YPT1

SCOPe Domain Sequences for d1ukvy_:

Sequence, based on SEQRES records:

>d1ukvy_ c.37.1.8 (Y:) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
seydylfklllignsgvgksclllrfsddtytndyistigvdfkiktveldgktvklqiw
dtagqerfrtitssyyrgshgiiivydvtdqesfngvkmwlqeidryatstvlkllvgnk
cdlkdkrvveydvakefadankmpfletsaldstnvedafltmarqikesmsqqnlnett
qkkedkgnvnlkgqsltntgggcc

Sequence, based on observed residues (ATOM records):

>d1ukvy_ c.37.1.8 (Y:) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
seydylfklllignsgvgksclllrfsddtytndyistigvdfkiktveldgktvklqiw
dtagqerfrtitssyyrgshgiiivydvtdqesfngvkmwlqeidryatstvlkllvgnk
cdlkdkrvveydvakefadankmpfletsaldstnvedafltmarqikesmsqqnlnett
qkkedkgnvnlkgqslc

Timeline for d1ukvy_:

• d1ukvy_ first appeared in SCOP 1.69
  
• d1ukvy_ appears in SCOPe 2.07