Lineage for d1sy6l1 (1sy6 L:1-106)

  1. Root: SCOP 1.71
  2. 546417Class b: All beta proteins [48724] (149 folds)
  3. 546418Fold b.1: Immunoglobulin-like beta-sandwich [48725] (25 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 546419Superfamily b.1.1: Immunoglobulin [48726] (4 families) (S)
  5. 546420Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (28 proteins)
  6. 547289Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (14 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 547704Species Mouse (Mus musculus), cluster 3.2 [TaxId:10090] [88528] (19 PDB entries)
  8. 547730Domain d1sy6l1: 1sy6 L:1-106 [106115]
    Other proteins in same PDB: d1sy6a1, d1sy6a2, d1sy6h1, d1sy6h2, d1sy6l2
    MQ P04940 P01837 # natural chimera

Details for d1sy6l1

PDB Entry: 1sy6 (more details), 2.1 Å

PDB Description: crystal structure of cd3gammaepsilon heterodimer in complex with okt3 fab fragment

SCOP Domain Sequences for d1sy6l1:

Sequence; same for both SEQRES and ATOM records: (download)

>d1sy6l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2}
qivltqspaimsaspgekvtmtcsasssvsymnwyqqksgtspkrwiydtsklasgvpah
frgsgsgtsysltisgmeaedaatyycqqwssnpftfgsgtklein

SCOP Domain Coordinates for d1sy6l1:

Click to download the PDB-style file with coordinates for d1sy6l1.
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Timeline for d1sy6l1: