Lineage for d1r8gb_ (1r8g B:)

  1. Root: SCOPe 2.06
  2. 2170735Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2214217Fold d.128: Glutamine synthetase/guanido kinase [55930] (1 superfamily)
    duplication: common core consists of two beta-alpha-beta2-alpha repeats
  4. 2214218Superfamily d.128.1: Glutamine synthetase/guanido kinase [55931] (6 families) (S)
  5. 2214444Family d.128.1.3: Glutamate-cysteine ligase family 2 (GCS2) [111160] (1 protein)
    Pfam PF04107; structural and functional relationships to Glutamine synthetase
  6. 2214445Protein Carboxylate-amine ligase YbdK [111161] (2 species)
  7. 2214446Species Escherichia coli [TaxId:562] [111162] (1 PDB entry)
    Uniprot P77213
  8. 2214448Domain d1r8gb_: 1r8g B: [104846]
    Structural genomics target

Details for d1r8gb_

PDB Entry: 1r8g (more details), 2.15 Å

PDB Description: structure and function of ybdk
PDB Compounds: (B:) Hypothetical protein ybdK

SCOPe Domain Sequences for d1r8gb_:

Sequence, based on SEQRES records: (download)

>d1r8gb_ d.128.1.3 (B:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]}
plpdfhvsepftlgielemqvvnppgydlsqdssmlidavknkitagevkhditesmlel
atdvcrdinqaagqfsamqkvvlqaatdhhleicgggthpfqkwqrqevcdneryqrtle
nfgyliqqatvfgqhvhvgcasgddaiyllhglsrfvphfialsaaspymqgtdtrfass
rpnifsafpdngpmpwvsnwqqfealfrclsyttmidsikdlhwdirpsphfgtvevrvm
dtpltlshavnmagliqatahwllterpfkhqekdyllykfnrfqacryglegvitdpht
gdrrpltedtlrllekiapsahkigassaiealhrqvvsglneaqlmrdfvadggsligl
vkkhceiwa

Sequence, based on observed residues (ATOM records): (download)

>d1r8gb_ d.128.1.3 (B:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]}
plpdfhvsepftlgielemqvvnppgydlsqdssmlidavknkitagevkhitesmlela
tdvcrdinqaagqfsamqkvvlqaatdhhleicgggthpfqkwqqrtlenfgyliqqatv
fgqhvhvgcasgddaiyllhglsrfvphfialsaaspymqgtdtrfassrpnifsafpdn
gpmpwvsnwqqfealfrclsyttmidsikdlhwdirpsphfgtvevrvmdtpltlshavn
magliqatahwllterpfkhqekdyllykfnrfqacryglegvitdphtgdrrpltedtl
rllekiapsahkigassaiealhrqvvsglneaqlmrdfvadggsliglvkkhceiwa

SCOPe Domain Coordinates for d1r8gb_:

Click to download the PDB-style file with coordinates for d1r8gb_.
(The format of our PDB-style files is described here.)

Timeline for d1r8gb_:

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Domains from other chains:
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d1r8ga_