SCOPe 2.05: Protein: DNA polymerase lambda

Lineage for Protein: DNA polymerase lambda

Root: SCOPe 2.05
Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
Fold d.218: Nucleotidyltransferase [81302] (1 superfamily)
core: alpha-beta-turn-beta-X-beta-(alpha); mixed beta-sheet, order of core strands: 123
Superfamily d.218.1: Nucleotidyltransferase [81301] (16 families)
Family d.218.1.2: DNA polymerase beta-like [81300] (5 proteins)
insert X in the core is an alpha-beta(2) unit; mixed 5-stranded sheet, order: 12543; contains extra C-terminal alpha+beta subdomain
Protein DNA polymerase lambda [102943] (1 species)

Species:

Human (Homo sapiens) [TaxId:9606] [102944] (26 PDB entries)

Domains for 1rzt:
1. Domain d1rzta3: 1rzt A:386-575 [98226]
  Other proteins in same PDB: d1rzta1, d1rzta2, d1rzte1, d1rzte2, d1rzti1, d1rzti2, d1rztm1, d1rztm2
  protein/DNA complex; complexed with edo, na
2. Domain d1rzte3: 1rzt E:386-575 [98229]
  Other proteins in same PDB: d1rzta1, d1rzta2, d1rzte1, d1rzte2, d1rzti1, d1rzti2, d1rztm1, d1rztm2
  protein/DNA complex; complexed with edo, na
3. Domain d1rzti3: 1rzt I:386-575 [98232]
  Other proteins in same PDB: d1rzta1, d1rzta2, d1rzte1, d1rzte2, d1rzti1, d1rzti2, d1rztm1, d1rztm2
  protein/DNA complex; complexed with edo, na
4. Domain d1rztm3: 1rzt M:386-575 [98235]
  Other proteins in same PDB: d1rzta1, d1rzta2, d1rzte1, d1rzte2, d1rzti1, d1rzti2, d1rztm1, d1rztm2
  protein/DNA complex; complexed with edo, na

Domains for 1xsl:

Domain d1xsla3: 1xsl A:386-575 [122272]
Other proteins in same PDB: d1xsla1, d1xsla2, d1xsle1, d1xsle2, d1xsli1, d1xsli2, d1xslm1, d1xslm2
automatically matched to d1rzta3
protein/DNA complex; complexed with cac, mg, na

Domain d1xsle3: 1xsl E:386-575 [122275]
Other proteins in same PDB: d1xsla1, d1xsla2, d1xsle1, d1xsle2, d1xsli1, d1xsli2, d1xslm1, d1xslm2
automatically matched to d1rzta3
protein/DNA complex; complexed with cac, mg, na

Domain d1xsli3: 1xsl I:386-575 [122278]
Other proteins in same PDB: d1xsla1, d1xsla2, d1xsle1, d1xsle2, d1xsli1, d1xsli2, d1xslm1, d1xslm2
automatically matched to d1rzta3
protein/DNA complex; complexed with cac, mg, na

Domain d1xslm3: 1xsl M:386-575 [122281]
Other proteins in same PDB: d1xsla1, d1xsla2, d1xsle1, d1xsle2, d1xsli1, d1xsli2, d1xslm1, d1xslm2
automatically matched to d1rzta3
protein/DNA complex; complexed with cac, mg, na

Domain for 1xsn:
- Domain d1xsna3: 1xsn A:386-575 [122284]
  Other proteins in same PDB: d1xsna1, d1xsna2
  automatically matched to d1rzta3
  protein/DNA complex; complexed with d3t, edo, mg, na
Domain for 1xsp:
- Domain d1xspa3: 1xsp A:386-575 [122287]
  Other proteins in same PDB: d1xspa1, d1xspa2
  automatically matched to d1rzta3
  protein/DNA complex; complexed with na, ppv
Domain for 2bcq:
- Domain d2bcqa3: 2bcq A:386-575 [128306]
  Other proteins in same PDB: d2bcqa1, d2bcqa2
  automated match to d2bcqa3
  protein/DNA complex; complexed with edo, mg, na, ppv

Domains for 2gws:

Domain d2gwsa3: 2gws A:386-575 [135815]
Other proteins in same PDB: d2gwsa1, d2gwsa2, d2gwse1, d2gwse2, d2gwsi1, d2gwsi2, d2gwsm1, d2gwsm2
automated match to d1rzta3
protein/DNA complex; complexed with cac, cl, edo, mg, na

Domain d2gwse3: 2gws E:386-575 [135818]
Other proteins in same PDB: d2gwsa1, d2gwsa2, d2gwse1, d2gwse2, d2gwsi1, d2gwsi2, d2gwsm1, d2gwsm2
automated match to d1rzta3
protein/DNA complex; complexed with cac, cl, edo, mg, na

Domain d2gwsi3: 2gws I:386-575 [135821]
Other proteins in same PDB: d2gwsa1, d2gwsa2, d2gwse1, d2gwse2, d2gwsi1, d2gwsi2, d2gwsm1, d2gwsm2
automated match to d1rzta3
protein/DNA complex; complexed with cac, cl, edo, mg, na

Domain d2gwsm3: 2gws M:386-575 [135824]
Other proteins in same PDB: d2gwsa1, d2gwsa2, d2gwse1, d2gwse2, d2gwsi1, d2gwsi2, d2gwsm1, d2gwsm2
automated match to d1rzta3
protein/DNA complex; complexed with cac, cl, edo, mg, na

Domain for 2pfn:
- Domain d2pfna3: 2pfn A:386-575 [139674]
  Other proteins in same PDB: d2pfna1, d2pfna2
  automated match to d1rzta3
  protein/DNA complex; complexed with dup, mg, na
Domain for 2pfo:
- Domain d2pfoa3: 2pfo A:386-575 [139677]
  Other proteins in same PDB: d2pfoa1, d2pfoa2
  automated match to d1rzta3
  protein/DNA complex; complexed with dup, edo, mg, mn, na
Domain for 2pfp:
- Domain d2pfpa3: 2pfp A:386-575 [139680]
  Other proteins in same PDB: d2pfpa1, d2pfpa2
  automated match to d1rzta3
  protein/DNA complex; complexed with dcp, mg, na
Domain for 2pfq:
- Domain d2pfqa3: 2pfq A:386-575 [139683]
  Other proteins in same PDB: d2pfqa1, d2pfqa2
  automated match to d1rzta3
  protein/DNA complex; complexed with dcp, mg, mn, na, ppv
Domains for 3c5f:
1. Domain d3c5fa3: 3c5f A:386-575 [155939]
  Other proteins in same PDB: d3c5fa1, d3c5fa2, d3c5fb1, d3c5fb2
  automated match to d1rzta3
  protein/DNA complex; complexed with na; mutant
2. Domain d3c5fb3: 3c5f B:386-575 [155942]
  Other proteins in same PDB: d3c5fa1, d3c5fa2, d3c5fb1, d3c5fb2
  automated match to d1rzta3
  protein/DNA complex; complexed with na; mutant
Domains for 3c5g:
1. Domain d3c5ga3: 3c5g A:386-575 [155945]
  Other proteins in same PDB: d3c5ga1, d3c5ga2, d3c5gb1, d3c5gb2
  automated match to d1rzta3
  protein/DNA complex; complexed with d3t, edo, mg, na; mutant
2. Domain d3c5gb3: 3c5g B:386-575 [155948]
  Other proteins in same PDB: d3c5ga1, d3c5ga2, d3c5gb1, d3c5gb2
  automated match to d1rzta3
  protein/DNA complex; complexed with d3t, edo, mg, na; mutant
Domain for 3hw8:
- Domain d3hw8a3: 3hw8 A:386-575 [246600]
  Other proteins in same PDB: d3hw8a1, d3hw8a2
  automated match to d1rzta3
  protein/DNA complex; complexed with d3t, edo, mg, na
Domain for 3mdc:
- Domain d3mdca3: 3mdc A:386-575 [247643]
  Other proteins in same PDB: d3mdca1, d3mdca2
  automated match to d1rzta3
  protein/DNA complex; complexed with gtf, mg, na
Domains for 3mgh:
1. Domain d3mgha3: 3mgh A:386-575 [247696]
  Other proteins in same PDB: d3mgha1, d3mgha2, d3mghc1, d3mghc2
  automated match to d1rzta3
  protein/DNA complex; complexed with na; mutant
2. Domain d3mghc3: 3mgh C:386-575 [247699]
  Other proteins in same PDB: d3mgha1, d3mgha2, d3mghc1, d3mghc2
  automated match to d1rzta3
  protein/DNA complex; complexed with na; mutant
Domain for 3mgi:
- Domain d3mgia3: 3mgi A:386-575 [247702]
  Other proteins in same PDB: d3mgia1, d3mgia2
  automated match to d1rzta3
  protein/DNA complex; complexed with d3t, mg, na; mutant
Domains for 3pml:
1. Domain d3pmla3: 3pml A:386-575 [248523]
  Other proteins in same PDB: d3pmla1, d3pmla2, d3pmlb1, d3pmlb2
  automated match to d1rzta3
  protein/DNA complex; complexed with 1gc, mg, na
2. Domain d3pmlb3: 3pml B:386-575 [248526]
  Other proteins in same PDB: d3pmla1, d3pmla2, d3pmlb1, d3pmlb2
  automated match to d1rzta3
  protein/DNA complex; complexed with 1gc, mg, na
Domain for 3pmn:
- Domain d3pmna3: 3pmn A:386-575 [248529]
  Other proteins in same PDB: d3pmna1, d3pmna2
  automated match to d1rzta3
  protein/DNA complex; complexed with 1gc, cl, mg, mn, na
Domain for 3pnc:
- Domain d3pnca3: 3pnc A:386-575 [248542]
  Other proteins in same PDB: d3pnca1, d3pnca2
  automated match to d1rzta3
  protein/DNA complex; complexed with 1gc, mg, na, trs
Domain for 3upq:
- Domain d3upqa3: 3upq A:386-575 [250250]
  Other proteins in same PDB: d3upqa1, d3upqa2
  automated match to d1rzta3
  protein/DNA complex; complexed with mn, na, so4, zan
Domain for 3uq0:
- Domain d3uq0a3: 3uq0 A:386-575 [250254]
  Other proteins in same PDB: d3uq0a1, d3uq0a2
  automated match to d1rzta3
  protein/DNA complex; complexed with cl, edo, na, so4
Domain for 3uq2:
- Domain d3uq2a3: 3uq2 A:386-575 [250257]
  Other proteins in same PDB: d3uq2a1, d3uq2a2
  automated match to d1rzta3
  protein/DNA complex; complexed with mg, na, ppv
Domain for 4fo6:
- Domain d4fo6a3: 4fo6 A:386-575 [252042]
  Other proteins in same PDB: d4fo6a1, d4fo6a2
  automated match to d1rzta3
  protein/DNA complex; complexed with cl, f2a, mg, mn, na

Domains for 4k4g:

Domain d4k4ga3: 4k4g A:386-580 [257798]
Other proteins in same PDB: d4k4ga1, d4k4ga2, d4k4ge1, d4k4ge2, d4k4gi1, d4k4gi2, d4k4gm1, d4k4gm2
automated match to d1rzta3
protein/DNA complex; complexed with 1s0, act, ca, cac

Domain d4k4ge3: 4k4g E:386-576 [257796]
Other proteins in same PDB: d4k4ga1, d4k4ga2, d4k4ge1, d4k4ge2, d4k4gi1, d4k4gi2, d4k4gm1, d4k4gm2
automated match to d1rzta3
protein/DNA complex; complexed with 1s0, act, ca, cac

Domain d4k4gi3: 4k4g I:386-581 [262796]
Other proteins in same PDB: d4k4ga1, d4k4ga2, d4k4ge1, d4k4ge2, d4k4gi1, d4k4gi2, d4k4gm1, d4k4gm2
automated match to d2bcqa3
protein/DNA complex; complexed with 1s0, act, ca, cac

Domain d4k4gm3: 4k4g M:386-578 [262799]
Other proteins in same PDB: d4k4ga1, d4k4ga2, d4k4ge1, d4k4ge2, d4k4gi1, d4k4gi2, d4k4gm1, d4k4gm2
automated match to d2bcqa3
protein/DNA complex; complexed with 1s0, act, ca, cac

Domains for 4k4h:

Domain d4k4ha3: 4k4h A:386-581 [262802]
Other proteins in same PDB: d4k4ha1, d4k4ha2, d4k4he1, d4k4he2, d4k4hi1, d4k4hi2, d4k4hm1, d4k4hm2
automated match to d2bcqa3
protein/DNA complex; complexed with 1rz, act, ca

Domain d4k4he3: 4k4h E:386-576 [258919]
Other proteins in same PDB: d4k4ha1, d4k4ha2, d4k4he1, d4k4he2, d4k4hi1, d4k4hi2, d4k4hm1, d4k4hm2
automated match to d1rzta3
protein/DNA complex; complexed with 1rz, act, ca

Domain d4k4hi3: 4k4h I:386-580 [262805]
Other proteins in same PDB: d4k4ha1, d4k4ha2, d4k4he1, d4k4he2, d4k4hi1, d4k4hi2, d4k4hm1, d4k4hm2
automated match to d2bcqa3
protein/DNA complex; complexed with 1rz, act, ca

Domain d4k4hm3: 4k4h M:386-577 [262808]
Other proteins in same PDB: d4k4ha1, d4k4ha2, d4k4he1, d4k4he2, d4k4hi1, d4k4hi2, d4k4hm1, d4k4hm2
automated match to d2bcqa3
protein/DNA complex; complexed with 1rz, act, ca

Domains for 4k4i:

Domain d4k4ia3: 4k4i A:386-582 [266522]
Other proteins in same PDB: d4k4ia1, d4k4ia2, d4k4ie1, d4k4ie2, d4k4ii1, d4k4ii2, d4k4im1, d4k4im2
automated match to d2bcqa3
protein/DNA complex; complexed with 1ry, act, ca, cac

Domain d4k4ie3: 4k4i E:386-577 [266525]
Other proteins in same PDB: d4k4ia1, d4k4ia2, d4k4ie1, d4k4ie2, d4k4ii1, d4k4ii2, d4k4im1, d4k4im2
automated match to d2bcqa3
protein/DNA complex; complexed with 1ry, act, ca, cac

Domain d4k4ii3: 4k4i I:386-580 [266528]
Other proteins in same PDB: d4k4ia1, d4k4ia2, d4k4ie1, d4k4ie2, d4k4ii1, d4k4ii2, d4k4im1, d4k4im2
automated match to d2bcqa3
protein/DNA complex; complexed with 1ry, act, ca, cac

Domain d4k4im3: 4k4i M:386-577 [266531]
Other proteins in same PDB: d4k4ia1, d4k4ia2, d4k4ie1, d4k4ie2, d4k4ii1, d4k4ii2, d4k4im1, d4k4im2
automated match to d2bcqa3
protein/DNA complex; complexed with 1ry, act, ca, cac

More info for Protein DNA polymerase lambda from d.218.1.2: DNA polymerase beta-like

Timeline for Protein DNA polymerase lambda from d.218.1.2: DNA polymerase beta-like:

Protein DNA polymerase lambda from d.218.1.2: DNA polymerase beta-like first appeared in SCOP 1.67
Protein DNA polymerase lambda from d.218.1.2: DNA polymerase beta-like appears in SCOPe 2.04
Protein DNA polymerase lambda from d.218.1.2: DNA polymerase beta-like appears in SCOPe 2.06
Protein DNA polymerase lambda from d.218.1.2: DNA polymerase beta-like appears in the current release, SCOPe 2.08