SCOPe 2.03: Protein: DNA methylase T4DAM

Lineage for Protein: DNA methylase T4DAM

Root: SCOPe 2.03
Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
Fold c.66: S-adenosyl-L-methionine-dependent methyltransferases [53334] (1 superfamily)
core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest
Superfamily c.66.1: S-adenosyl-L-methionine-dependent methyltransferases [53335] (58 families)
Family c.66.1.28: N6 adenine-specific DNA methylase, DAM [88788] (3 proteins)
automatically mapped to Pfam PF02086
Protein DNA methylase T4DAM [102584] (2 species)

Species:

Bacteriophage T4 [TaxId:10665] [102585] (5 PDB entries)
1. Domain for 1q0s:
  - Domain d1q0sa_: 1q0s A: [95509]
    complexed with sah
2. Domains for 1q0t:
  1. Domain d1q0ta_: 1q0t A: [95510]
    complexed with DNA
    protein/DNA complex; complexed with iod, sah
  2. Domain d1q0tb_: 1q0t B: [95511]
    complexed with DNA
    protein/DNA complex; complexed with iod, sah
3. Domains for 1yf3:
  1. Domain d1yf3a1: 1yf3 A:1-259 [123046]
    protein/DNA complex; complexed with gol, sah
  2. Domain d1yf3b_: 1yf3 B: [123047]
    automated match to d1q0sa_
    protein/DNA complex; complexed with gol, sah
4. Domains for 1yfj:
  1. Domain d1yfja1: 1yfj A:1-259 [123070]
    protein/DNA complex; complexed with ca, cl, sah
  2. Domain d1yfjb_: 1yfj B: [123071]
    automated match to d1q0sa_
    protein/DNA complex; complexed with ca, cl, sah
  3. Domain d1yfjc_: 1yfj C: [123072]
    automated match to d1q0sa_
    protein/DNA complex; complexed with ca, cl, sah
  4. Domain d1yfjd_: 1yfj D: [123073]
    automated match to d1q0sa_
    protein/DNA complex; complexed with ca, cl, sah
  5. Domain d1yfje_: 1yfj E: [123074]
    automated match to d1q0sa_
    protein/DNA complex; complexed with ca, cl, sah
  6. Domain d1yfjf_: 1yfj F: [123075]
    automated match to d1q0sa_
    protein/DNA complex; complexed with ca, cl, sah
5. Domains for 1yfl:
  1. Domain d1yfla1: 1yfl A:1-259 [123076]
    automatically matched to 1YFJ A:1-259
    protein/DNA complex; complexed with sfg
  2. Domain d1yflb1: 1yfl B:1-259 [123077]
    automatically matched to 1YFJ A:1-259
    protein/DNA complex; complexed with sfg
  3. Domain d1yfld1: 1yfl D:1-259 [123078]
    automatically matched to 1YFJ A:1-259
    protein/DNA complex; complexed with sfg
  4. Domain d1yfle1: 1yfl E:1-259 [123079]
    automatically matched to 1YFJ A:1-259
    protein/DNA complex; complexed with sfg
Escherichia coli [TaxId:562] [190028] (2 PDB entries)
1. Domains for 2g1p:
  1. Domain d2g1pa_: 2g1p A: [164541]
    automated match to d2dpma_
    protein/DNA complex; complexed with gol, sah
  2. Domain d2g1pb_: 2g1p B: [164542]
    automated match to d2dpma_
    protein/DNA complex; complexed with gol, sah
2. Domains for 2ore:
  1. Domain d2ored_: 2ore D: [205353]
    automated match to d2g1pa_
    complexed with sah, so4
  2. Domain d2oree_: 2ore E: [205354]
    automated match to d2g1pa_
    complexed with sah, so4
  3. Domain d2oref_: 2ore F: [205355]
    automated match to d2g1pa_
    complexed with sah, so4

More info for Protein DNA methylase T4DAM from c.66.1.28: N6 adenine-specific DNA methylase, DAM

Timeline for Protein DNA methylase T4DAM from c.66.1.28: N6 adenine-specific DNA methylase, DAM:

Protein DNA methylase T4DAM from c.66.1.28: N6 adenine-specific DNA methylase, DAM first appeared in SCOP 1.67
Protein DNA methylase T4DAM from c.66.1.28: N6 adenine-specific DNA methylase, DAM appears in SCOPe 2.02
Protein DNA methylase T4DAM from c.66.1.28: N6 adenine-specific DNA methylase, DAM appears in SCOPe 2.04
Protein DNA methylase T4DAM from c.66.1.28: N6 adenine-specific DNA methylase, DAM appears in the current release, SCOPe 2.08