SCOPe 2.04: Protein: DNA polymerase lambda

Lineage for Protein: DNA polymerase lambda

Root: SCOPe 2.04
Class a: All alpha proteins [46456] (285 folds)
Fold a.60: SAM domain-like [47768] (16 superfamilies)
4-5 helices; bundle of two orthogonally packed alpha-hairpins; involved in the interactions with DNA and proteins
Superfamily a.60.6: DNA polymerase beta, N-terminal domain-like [47802] (2 families)
contains one classic and one pseudo HhH motifs
Family a.60.6.1: DNA polymerase beta, N-terminal domain-like [47803] (3 proteins)
Protein DNA polymerase lambda [101251] (1 species)

Species:

Human (Homo sapiens) [TaxId:9606] [101252] (26 PDB entries)

Domain for 1nzp:
- Domain d1nzpa_: 1nzp A: [92385]
  one (lyase) domain only
  protein/DNA complex
Domains for 1rzt:
1. Domain d1rzta1: 1rzt A:249-328 [98224]
  Other proteins in same PDB: d1rzta2, d1rzta3, d1rzte2, d1rzte3, d1rzti2, d1rzti3, d1rztm2, d1rztm3
  protein/DNA complex; complexed with edo, na
2. Domain d1rzte1: 1rzt E:250-328 [98227]
  Other proteins in same PDB: d1rzta2, d1rzta3, d1rzte2, d1rzte3, d1rzti2, d1rzti3, d1rztm2, d1rztm3
  protein/DNA complex; complexed with edo, na
3. Domain d1rzti1: 1rzt I:250-328 [98230]
  Other proteins in same PDB: d1rzta2, d1rzta3, d1rzte2, d1rzte3, d1rzti2, d1rzti3, d1rztm2, d1rztm3
  protein/DNA complex; complexed with edo, na
4. Domain d1rztm1: 1rzt M:249-328 [98233]
  Other proteins in same PDB: d1rzta2, d1rzta3, d1rzte2, d1rzte3, d1rzti2, d1rzti3, d1rztm2, d1rztm3
  protein/DNA complex; complexed with edo, na

Domains for 1xsl:

Domain d1xsla1: 1xsl A:249-327 [122270]
Other proteins in same PDB: d1xsla2, d1xsla3, d1xsle2, d1xsle3, d1xsli2, d1xsli3, d1xslm2, d1xslm3
automatically matched to d1nzpa_
protein/DNA complex; complexed with cac, mg, na

Domain d1xsle1: 1xsl E:251-327 [122273]
Other proteins in same PDB: d1xsla2, d1xsla3, d1xsle2, d1xsle3, d1xsli2, d1xsli3, d1xslm2, d1xslm3
automatically matched to d1nzpa_
protein/DNA complex; complexed with cac, mg, na

Domain d1xsli1: 1xsl I:250-327 [122276]
Other proteins in same PDB: d1xsla2, d1xsla3, d1xsle2, d1xsle3, d1xsli2, d1xsli3, d1xslm2, d1xslm3
automatically matched to d1nzpa_
protein/DNA complex; complexed with cac, mg, na

Domain d1xslm1: 1xsl M:249-327 [122279]
Other proteins in same PDB: d1xsla2, d1xsla3, d1xsle2, d1xsle3, d1xsli2, d1xsli3, d1xslm2, d1xslm3
automatically matched to d1nzpa_
protein/DNA complex; complexed with cac, mg, na

Domain for 1xsn:
- Domain d1xsna1: 1xsn A:252-327 [122282]
  Other proteins in same PDB: d1xsna2, d1xsna3
  automatically matched to d1nzpa_
  protein/DNA complex; complexed with d3t, edo, mg, na
Domain for 1xsp:
- Domain d1xspa1: 1xsp A:252-327 [122285]
  Other proteins in same PDB: d1xspa2, d1xspa3
  automatically matched to d1nzpa_
  protein/DNA complex; complexed with na, ppv
Domain for 2bcq:
- Domain d2bcqa1: 2bcq A:252-328 [128304]
  Other proteins in same PDB: d2bcqa2, d2bcqa3
  automated match to d1rzta1
  protein/DNA complex; complexed with edo, mg, na, ppv

Domains for 2gws:

Domain d2gwsa1: 2gws A:249-328 [135813]
Other proteins in same PDB: d2gwsa2, d2gwsa3, d2gwse2, d2gwse3, d2gwsi2, d2gwsi3, d2gwsm2, d2gwsm3
automated match to d1rzta1
protein/DNA complex; complexed with cac, cl, edo, mg, na

Domain d2gwse1: 2gws E:250-328 [135816]
Other proteins in same PDB: d2gwsa2, d2gwsa3, d2gwse2, d2gwse3, d2gwsi2, d2gwsi3, d2gwsm2, d2gwsm3
automated match to d1rzta1
protein/DNA complex; complexed with cac, cl, edo, mg, na

Domain d2gwsi1: 2gws I:250-328 [135819]
Other proteins in same PDB: d2gwsa2, d2gwsa3, d2gwse2, d2gwse3, d2gwsi2, d2gwsi3, d2gwsm2, d2gwsm3
automated match to d1rzta1
protein/DNA complex; complexed with cac, cl, edo, mg, na

Domain d2gwsm1: 2gws M:250-328 [135822]
Other proteins in same PDB: d2gwsa2, d2gwsa3, d2gwse2, d2gwse3, d2gwsi2, d2gwsi3, d2gwsm2, d2gwsm3
automated match to d1rzta1
protein/DNA complex; complexed with cac, cl, edo, mg, na

Domain for 2pfn:
- Domain d2pfna1: 2pfn A:251-328 [139672]
  Other proteins in same PDB: d2pfna2, d2pfna3
  automated match to d1rzta1
  protein/DNA complex; complexed with dup, mg, na
Domain for 2pfo:
- Domain d2pfoa1: 2pfo A:253-328 [139675]
  Other proteins in same PDB: d2pfoa2, d2pfoa3
  automated match to d1rzta1
  protein/DNA complex; complexed with dup, edo, mg, mn, na
Domain for 2pfp:
- Domain d2pfpa1: 2pfp A:250-328 [139678]
  Other proteins in same PDB: d2pfpa2, d2pfpa3
  automated match to d1rzta1
  protein/DNA complex; complexed with dcp, mg, na
Domain for 2pfq:
- Domain d2pfqa1: 2pfq A:252-328 [139681]
  Other proteins in same PDB: d2pfqa2, d2pfqa3
  automated match to d1rzta1
  protein/DNA complex; complexed with dcp, mg, mn, na, ppv
Domains for 3c5f:
1. Domain d3c5fa1: 3c5f A:250-328 [155937]
  Other proteins in same PDB: d3c5fa2, d3c5fa3, d3c5fb2, d3c5fb3
  automated match to d1rzta1
  protein/DNA complex; complexed with na; mutant
2. Domain d3c5fb1: 3c5f B:250-328 [155940]
  Other proteins in same PDB: d3c5fa2, d3c5fa3, d3c5fb2, d3c5fb3
  automated match to d1rzta1
  protein/DNA complex; complexed with na; mutant
Domains for 3c5g:
1. Domain d3c5ga1: 3c5g A:249-328 [155943]
  Other proteins in same PDB: d3c5ga2, d3c5ga3, d3c5gb2, d3c5gb3
  automated match to d1rzta1
  protein/DNA complex; complexed with d3t, edo, mg, na; mutant
2. Domain d3c5gb1: 3c5g B:245-328 [155946]
  Other proteins in same PDB: d3c5ga2, d3c5ga3, d3c5gb2, d3c5gb3
  automated match to d1rzta1
  protein/DNA complex; complexed with d3t, edo, mg, na; mutant
Domain for 3hw8:
- Domain d3hw8a1: 3hw8 A:249-328 [246598]
  Other proteins in same PDB: d3hw8a2, d3hw8a3
  automated match to d1rzta1
  protein/DNA complex; complexed with d3t, edo, mg, na
Domain for 3mdc:
- Domain d3mdca1: 3mdc A:254-328 [247641]
  Other proteins in same PDB: d3mdca2, d3mdca3
  automated match to d1rzta1
  protein/DNA complex; complexed with gtf, mg, na
Domains for 3mgh:
1. Domain d3mgha1: 3mgh A:249-328 [247694]
  Other proteins in same PDB: d3mgha2, d3mgha3, d3mghc2, d3mghc3
  automated match to d1rzta1
  protein/DNA complex; complexed with na; mutant
2. Domain d3mghc1: 3mgh C:250-328 [247697]
  Other proteins in same PDB: d3mgha2, d3mgha3, d3mghc2, d3mghc3
  automated match to d1rzta1
  protein/DNA complex; complexed with na; mutant
Domain for 3mgi:
- Domain d3mgia1: 3mgi A:252-328 [247700]
  Other proteins in same PDB: d3mgia2, d3mgia3
  automated match to d1rzta1
  protein/DNA complex; complexed with d3t, mg, na; mutant
Domains for 3pml:
1. Domain d3pmla1: 3pml A:249-328 [248521]
  Other proteins in same PDB: d3pmla2, d3pmla3, d3pmlb2, d3pmlb3
  automated match to d1rzta1
  protein/DNA complex; complexed with 1gc, mg, na
2. Domain d3pmlb1: 3pml B:247-328 [248524]
  Other proteins in same PDB: d3pmla2, d3pmla3, d3pmlb2, d3pmlb3
  automated match to d1rzta1
  protein/DNA complex; complexed with 1gc, mg, na
Domain for 3pmn:
- Domain d3pmna1: 3pmn A:249-328 [248527]
  Other proteins in same PDB: d3pmna2, d3pmna3
  automated match to d1rzta1
  protein/DNA complex; complexed with 1gc, cl, mg, mn, na
Domain for 3pnc:
- Domain d3pnca1: 3pnc A:250-328 [248540]
  Other proteins in same PDB: d3pnca2, d3pnca3
  automated match to d1rzta1
  protein/DNA complex; complexed with 1gc, mg, na, trs
Domain for 3upq:
- Domain d3upqa1: 3upq A:252-328 [250248]
  Other proteins in same PDB: d3upqa2, d3upqa3
  automated match to d1rzta1
  protein/DNA complex; complexed with mn, na, so4, zan
Domain for 3uq0:
- Domain d3uq0a1: 3uq0 A:251-328 [250252]
  Other proteins in same PDB: d3uq0a2, d3uq0a3
  automated match to d1rzta1
  protein/DNA complex; complexed with cl, edo, na, so4
Domain for 3uq2:
- Domain d3uq2a1: 3uq2 A:253-328 [250255]
  Other proteins in same PDB: d3uq2a2, d3uq2a3
  automated match to d1rzta1
  protein/DNA complex; complexed with mg, na, ppv
Domain for 4fo6:
- Domain d4fo6a1: 4fo6 A:252-328 [252040]
  Other proteins in same PDB: d4fo6a2, d4fo6a3
  automated match to d1rzta1
  protein/DNA complex; complexed with cl, f2a, mg, mn, na
Domains for 4k4g:
1. Domain d4k4ga1: 4k4g A:250-328 [257795]
  Other proteins in same PDB: d4k4ga2, d4k4ga3, d4k4ge2, d4k4ge3
  automated match to d1rzta1
  protein/DNA complex; complexed with 1s0, act, ca, cac
2. Domain d4k4ge1: 4k4g E:249-328 [257793]
  Other proteins in same PDB: d4k4ga2, d4k4ga3, d4k4ge2, d4k4ge3
  automated match to d1rzta1
  protein/DNA complex; complexed with 1s0, act, ca, cac
Domain for 4k4h:
- Domain d4k4he1: 4k4h E:249-328 [258917]
  Other proteins in same PDB: d4k4he2, d4k4he3
  automated match to d1rzta1
  protein/DNA complex; complexed with 1rz, act, ca

More info for Protein DNA polymerase lambda from a.60.6.1: DNA polymerase beta, N-terminal domain-like

Timeline for Protein DNA polymerase lambda from a.60.6.1: DNA polymerase beta, N-terminal domain-like:

Protein DNA polymerase lambda from a.60.6.1: DNA polymerase beta, N-terminal domain-like first appeared in SCOP 1.67
Protein DNA polymerase lambda from a.60.6.1: DNA polymerase beta, N-terminal domain-like appears in SCOPe 2.03
Protein DNA polymerase lambda from a.60.6.1: DNA polymerase beta, N-terminal domain-like appears in SCOPe 2.05
Protein DNA polymerase lambda from a.60.6.1: DNA polymerase beta, N-terminal domain-like appears in the current release, SCOPe 2.08