SCOPe 2.01: Protein: DinB homolog (DBH)

Lineage for Protein: DinB homolog (DBH)

Root: SCOPe 2.01
Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families)
"palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

Family e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain [100888] (4 proteins)
contains a distinct 'fingers' domain possibly related to the C-terminal subdomain of hypothetical protein Ta1206 (1qw2)

Protein DinB homolog (DBH) [100889] (3 species)

Species:

Sulfolobus acidocaldarius [TaxId:2285] [160954] (3 PDB entries)
1. Domain for 3bq0:
  - Domain d3bq0a2: 3bq0 A:1-239 [155492]
    Other proteins in same PDB: d3bq0a1
    automatically matched to d1k1qa2
    protein/DNA complex; complexed with ca
2. Domain for 3bq1:
  - Domain d3bq1a2: 3bq1 A:1-239 [155494]
    Other proteins in same PDB: d3bq1a1
    automatically matched to d1k1qa2
    protein/DNA complex; complexed with ca, dg3
3. Domain for 3bq2:
  - Domain d3bq2a2: 3bq2 A:1-239 [155496]
    Other proteins in same PDB: d3bq2a1
    automatically matched to d1k1qa2
    protein/DNA complex; complexed with ca
Sulfolobus solfataricus [TaxId:2287] [100891] (3 PDB entries)
1. Domain for 1im4:
  - Domain d1im4a_: 1im4 A: [62581]
    "palm" and "fingers" domains only
    complexed with so4
2. Domains for 1k1q:
  1. Domain d1k1qa2: 1k1q A:1-239 [90383]
    Other proteins in same PDB: d1k1qa1, d1k1qb1
  2. Domain d1k1qb2: 1k1q B:1-239 [90385]
    Other proteins in same PDB: d1k1qa1, d1k1qb1
3. Domain for 1k1s:
  - Domain d1k1sa2: 1k1s A:1-239 [90387]
    Other proteins in same PDB: d1k1sa1
Sulfolobus solfataricus, DNA polymerase IV [TaxId:2287] [100890] (50 PDB entries)
1. Domain for 1jx4:
  - Domain d1jx4a2: 1jx4 A:1-240 [90379]
    Other proteins in same PDB: d1jx4a1
    protein/DNA complex; complexed with adi, ca, mg
2. Domain for 1jxl:
  - Domain d1jxla2: 1jxl A:1-240 [90381]
    Other proteins in same PDB: d1jxla1
    protein/DNA complex; complexed with ca, dg3, edo, mg
3. Domain for 1n48:
  - Domain d1n48a2: 1n48 A:1-240 [91616]
    Other proteins in same PDB: d1n48a1
    protein/DNA complex; complexed with atp, ca
4. Domains for 1n56:
  1. Domain d1n56a2: 1n56 A:1-240 [91681]
    Other proteins in same PDB: d1n56a1, d1n56b1
    protein/DNA complex; complexed with atp, ca, mg
  2. Domain d1n56b2: 1n56 B:1-240 [91683]
    Other proteins in same PDB: d1n56a1, d1n56b1
    protein/DNA complex; complexed with atp, ca, mg
5. Domain for 1ryr:
  - Domain d1ryra2: 1ryr A:1-240 [98110]
    Other proteins in same PDB: d1ryra1
    protein/DNA complex; complexed with atp, ca
6. Domains for 1rys:
  1. Domain d1rysa2: 1rys A:1-240 [98112]
    Other proteins in same PDB: d1rysa1, d1rysb1
    protein/DNA complex; complexed with atp, ca, edo, na
  2. Domain d1rysb2: 1rys B:1-240 [98114]
    Other proteins in same PDB: d1rysa1, d1rysb1
    protein/DNA complex; complexed with atp, ca, edo, na
7. Domains for 1s0m:
  1. Domain d1s0ma2: 1s0m A:1-240 [98291]
    Other proteins in same PDB: d1s0ma1, d1s0mb1
    protein/DNA complex; complexed with bap, ca, dtp, mg
  2. Domain d1s0mb2: 1s0m B:1-240 [98293]
    Other proteins in same PDB: d1s0ma1, d1s0mb1
    protein/DNA complex; complexed with bap, ca, dtp, mg
8. Domain for 1s0n:
  - Domain d1s0na2: 1s0n A:1-240 [98295]
    Other proteins in same PDB: d1s0na1
    protein/DNA complex; complexed with ca, dcp
9. Domains for 1s0o:
  1. Domain d1s0oa2: 1s0o A:1-240 [98297]
    Other proteins in same PDB: d1s0oa1, d1s0ob1
    protein/DNA complex; complexed with ca, mg, ttp
  2. Domain d1s0ob2: 1s0o B:1-240 [98299]
    Other proteins in same PDB: d1s0oa1, d1s0ob1
    protein/DNA complex; complexed with ca, mg, ttp
10. Domain for 1s10:
  - Domain d1s10a2: 1s10 A:1-240 [98328]
    Other proteins in same PDB: d1s10a1
    protein/DNA complex; complexed with ca, dcp
11. Domains for 1s97:
  1. Domain d1s97a2: 1s97 A:1-240 [98743]
    Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
    protein/DNA complex; complexed with ca, dct
  2. Domain d1s97b2: 1s97 B:1-240 [98745]
    Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
    protein/DNA complex; complexed with ca, dct
  3. Domain d1s97c2: 1s97 C:1-240 [98747]
    Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
    protein/DNA complex; complexed with ca, dct
  4. Domain d1s97d2: 1s97 D:1-240 [98749]
    Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
    protein/DNA complex; complexed with ca, dct
12. Domains for 1s9f:
  1. Domain d1s9fa2: 1s9f A:2-240 [118914]
    Other proteins in same PDB: d1s9fa1, d1s9fb1, d1s9fc1, d1s9fd1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, ddy, mg
  2. Domain d1s9fb2: 1s9f B:2-240 [118916]
    Other proteins in same PDB: d1s9fa1, d1s9fb1, d1s9fc1, d1s9fd1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, ddy, mg
  3. Domain d1s9fc2: 1s9f C:2-240 [118918]
    Other proteins in same PDB: d1s9fa1, d1s9fb1, d1s9fc1, d1s9fd1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, ddy, mg
  4. Domain d1s9fd2: 1s9f D:2-240 [118920]
    Other proteins in same PDB: d1s9fa1, d1s9fb1, d1s9fc1, d1s9fd1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, ddy, mg
13. Domain for 2ago:
  - Domain d2agoa2: 2ago A:2-240 [126730]
    Other proteins in same PDB: d2agoa1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, mg, pop
14. Domains for 2agp:
  1. Domain d2agpa2: 2agp A:2-240 [126732]
    Other proteins in same PDB: d2agpa1, d2agpb1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dgt, mg
  2. Domain d2agpb2: 2agp B:2-240 [126734]
    Other proteins in same PDB: d2agpa1, d2agpb1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dgt, mg
15. Domain for 2agq:
  - Domain d2agqa2: 2agq A:2-240 [126736]
    Other proteins in same PDB: d2agqa1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dtp, mg
16. Domains for 2asd:
  1. Domain d2asda2: 2asd A:2-240 [127249]
    Other proteins in same PDB: d2asda1, d2asdb1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dcp
  2. Domain d2asdb2: 2asd B:1002-1240 [127251]
    Other proteins in same PDB: d2asda1, d2asdb1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dcp
17. Domains for 2asj:
  1. Domain d2asja2: 2asj A:2-240 [127255]
    Other proteins in same PDB: d2asja1, d2asjb1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca
  2. Domain d2asjb2: 2asj B:1002-1240 [127257]
    Other proteins in same PDB: d2asja1, d2asjb1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca
18. Domains for 2asl:
  1. Domain d2asla2: 2asl A:2-240 [127259]
    Other proteins in same PDB: d2asla1, d2aslb1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca
  2. Domain d2aslb2: 2asl B:1002-1240 [127261]
    Other proteins in same PDB: d2asla1, d2aslb1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca
19. Domains for 2atl:
  1. Domain d2atla2: 2atl A:2-240 [127297]
    Other proteins in same PDB: d2atla1, d2atlb1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dcp
  2. Domain d2atlb2: 2atl B:1002-1240 [127299]
    Other proteins in same PDB: d2atla1, d2atlb1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dcp
20. Domains for 2au0:
  1. Domain d2au0a2: 2au0 A:2-240 [127319]
    Other proteins in same PDB: d2au0a1, d2au0b1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca
  2. Domain d2au0b2: 2au0 B:1002-1240 [127321]
    Other proteins in same PDB: d2au0a1, d2au0b1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca
21. Domain for 2bq3:
  - Domain d2bq3a2: 2bq3 A:2-240 [128960]
    Other proteins in same PDB: d2bq3a1
    automatically matched to d1jx4a2
    complexed with ca
22. Domain for 2bqr:
  - Domain d2bqra2: 2bqr A:2-240 [128966]
    Other proteins in same PDB: d2bqra1
    automatically matched to d1jx4a2
    complexed with ca, dtp
23. Domain for 2bqu:
  - Domain d2bqua2: 2bqu A:2-240 [128968]
    Other proteins in same PDB: d2bqua1
    automatically matched to d1jx4a2
    complexed with ca, dad
24. Domain for 2br0:
  - Domain d2br0a2: 2br0 A:2-240 [128974]
    Other proteins in same PDB: d2br0a1
    automatically matched to d1jx4a2
    complexed with ca, dg
25. Domain for 2c22:
  - Domain d2c22a2: 2c22 A:2-240 [129656]
    Other proteins in same PDB: d2c22a1
    automatically matched to d1jx4a2
    complexed with ca, dgt
26. Domain for 2c28:
  - Domain d2c28a2: 2c28 A:2-240 [129661]
    Other proteins in same PDB: d2c28a1
    automatically matched to d1jx4a2
    complexed with ca, dg
27. Domain for 2c2d:
  - Domain d2c2da2: 2c2d A:2-240 [129665]
    Other proteins in same PDB: d2c2da1
    automatically matched to d1jx4a2
    complexed with ca, dtp
28. Domain for 2c2e:
  - Domain d2c2ea2: 2c2e A:2-240 [129667]
    Other proteins in same PDB: d2c2ea1
    automatically matched to d1jx4a2
    complexed with ca, dcp
29. Domain for 2c2r:
  - Domain d2c2ra2: 2c2r A:2-240 [129681]
    Other proteins in same PDB: d2c2ra1
    automatically matched to d1jx4a2
    complexed with ca, dct
30. Domain for 2ibk:
  - Domain d2ibka2: 2ibk A:1-240 [147599]
    Other proteins in same PDB: d2ibka1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with bap, ca, edo, gol, pop
31. Domain for 2imw:
  - Domain d2imwp2: 2imw P:2-240 [137520]
    Other proteins in same PDB: d2imwp1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dds, edo
32. Domain for 2j6s:
  - Domain d2j6sa2: 2j6s A:1-240 [138090]
    Other proteins in same PDB: d2j6sa1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dtp
33. Domain for 2j6t:
  - Domain d2j6ta2: 2j6t A:2-240 [138092]
    Other proteins in same PDB: d2j6ta1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dtp
34. Domain for 2j6u:
  - Domain d2j6ua2: 2j6u A:5-243 [138094]
    Other proteins in same PDB: d2j6ua1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dgt
35. Domain for 2jef:
  - Domain d2jefa2: 2jef A:2-240 [138279]
    Other proteins in same PDB: d2jefa1
    automatically matched to d1jx4a2
    complexed with ca, dgt
36. Domain for 2jeg:
  - Domain d2jega2: 2jeg A:2-240 [138281]
    Other proteins in same PDB: d2jega1
    automatically matched to d1jx4a2
    complexed with ca, dgt
37. Domain for 2jei:
  - Domain d2jeia2: 2jei A:2-240 [138283]
    Other proteins in same PDB: d2jeia1
    automatically matched to d1jx4a2
    complexed with ca, dgt
38. Domain for 2jej:
  - Domain d2jeja2: 2jej A:2-240 [138285]
    Other proteins in same PDB: d2jeja1
    automatically matched to d1jx4a2
    complexed with ca, dgt
39. Domain for 2r8g:
  - Domain d2r8ga2: 2r8g A:1-240 [151718]
    Other proteins in same PDB: d2r8ga1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dgt
40. Domain for 2r8h:
  - Domain d2r8ha2: 2r8h A:1-240 [151720]
    Other proteins in same PDB: d2r8ha1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dgt
41. Domain for 2r8i:
  - Domain d2r8ia2: 2r8i A:1-240 [151722]
    Other proteins in same PDB: d2r8ia1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dtp
42. Domain for 2rdi:
  - Domain d2rdia2: 2rdi A:1-240 [151929]
    Other proteins in same PDB: d2rdia1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with gol, peg
43. Domains for 2rdj:
  1. Domain d2rdja2: 2rdj A:1-240 [151931]
    Other proteins in same PDB: d2rdja1, d2rdjb1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, gol, tmp
  2. Domain d2rdjb2: 2rdj B:1-240 [151933]
    Other proteins in same PDB: d2rdja1, d2rdjb1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, gol, tmp
44. Domain for 2uvr:
  - Domain d2uvra2: 2uvr A:1-240 [139981]
    Other proteins in same PDB: d2uvra1
    automatically matched to d1jx4a2
    complexed with ca, dgt; mutant
45. Domain for 2uvu:
  - Domain d2uvua2: 2uvu A:1-240 [139983]
    Other proteins in same PDB: d2uvua1
    automatically matched to d1jx4a2
    complexed with ca, dgt; mutant
46. Domain for 2uvv:
  - Domain d2uvva2: 2uvv A:1-240 [139985]
    Other proteins in same PDB: d2uvva1
    automatically matched to d1jx4a2
    complexed with ca, dgt; mutant
47. Domain for 2uvw:
  - Domain d2uvwa2: 2uvw A:1-240 [139987]
    Other proteins in same PDB: d2uvwa1
    automatically matched to d1jx4a2
    complexed with ca, dgt; mutant
48. Domains for 2v9w:
  1. Domain d2v9wa2: 2v9w A:1-240 [152812]
    Other proteins in same PDB: d2v9wa1, d2v9wb1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dct
  2. Domain d2v9wb2: 2v9w B:1-240 [152814]
    Other proteins in same PDB: d2v9wa1, d2v9wb1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dct
49. Domains for 2va2:
  1. Domain d2va2a2: 2va2 A:1-240 [152816]
    Other proteins in same PDB: d2va2a1, d2va2b1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dct
  2. Domain d2va2b2: 2va2 B:1-240 [152818]
    Other proteins in same PDB: d2va2a1, d2va2b1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dct
50. Domain for 2va3:
  - Domain d2va3a2: 2va3 A:1-240 [152820]
    Other proteins in same PDB: d2va3a1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dgt

More info for Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain

Timeline for Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain:

Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain first appeared in SCOP 1.67
Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain appears in SCOP 1.75
Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain appears in SCOPe 2.02
Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain appears in the current release, SCOPe 2.08