Lineage for Protein: DinB homolog (DBH)

  1. Root: SCOP 1.75
  2. 883176Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)
  3. 884269Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 884270Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 884843Family e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain [100888] (4 proteins)
    contains a distinct 'fingers' domain possibly related to the C-terminal subdomain of hypothetical protein Ta1206 (1qw2)
  6. 884844Protein DinB homolog (DBH) [100889] (3 species)

Species:

  1. 884845Archaeon Sulfolobus solfataricus [TaxId:2287] [100891] (3 PDB entries)
    1. Domain for 1im4:
      • 884846Domain d1im4a_: 1im4 A: [62581]
        "palm" and "fingers" domains only
        complexed with so4
    2. Domains for 1k1q:
      1. 884848Domain d1k1qa2: 1k1q A:1-239 [90383]
        Other proteins in same PDB: d1k1qa1, d1k1qb1
      2. 884849Domain d1k1qb2: 1k1q B:1-239 [90385]
        Other proteins in same PDB: d1k1qa1, d1k1qb1
        mutant
    3. Domain for 1k1s:
  2. 884850Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId:2287] [100890] (50 PDB entries)
    1. Domain for 1jx4:
    2. Domain for 1jxl:
    3. Domain for 1n48:
    4. Domains for 1n56:
      1. 884881Domain d1n56a2: 1n56 A:1-240 [91681]
        Other proteins in same PDB: d1n56a1, d1n56b1
      2. 884882Domain d1n56b2: 1n56 B:1-240 [91683]
        Other proteins in same PDB: d1n56a1, d1n56b1
        complexed with 3dr, atp, ca, mg
    5. Domain for 1ryr:
    6. Domains for 1rys:
      1. 884857Domain d1rysa2: 1rys A:1-240 [98112]
        Other proteins in same PDB: d1rysa1, d1rysb1
      2. 884858Domain d1rysb2: 1rys B:1-240 [98114]
        Other proteins in same PDB: d1rysa1, d1rysb1
        complexed with atp, ca, edo, na
    7. Domains for 1s0m:
      1. 884891Domain d1s0ma2: 1s0m A:1-240 [98291]
        Other proteins in same PDB: d1s0ma1, d1s0mb1
      2. 884892Domain d1s0mb2: 1s0m B:1-240 [98293]
        Other proteins in same PDB: d1s0ma1, d1s0mb1
        complexed with atp, bpa, ca, mg
    8. Domain for 1s0n:
    9. Domains for 1s0o:
      1. 884863Domain d1s0oa2: 1s0o A:1-240 [98297]
        Other proteins in same PDB: d1s0oa1, d1s0ob1
      2. 884864Domain d1s0ob2: 1s0o B:1-240 [98299]
        Other proteins in same PDB: d1s0oa1, d1s0ob1
        complexed with ca, mg, ttp
    10. Domain for 1s10:
    11. Domains for 1s97:
      1. 884883Domain d1s97a2: 1s97 A:1-240 [98743]
        Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
      2. 884884Domain d1s97b2: 1s97 B:1-240 [98745]
        Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
      3. 884885Domain d1s97c2: 1s97 C:1-240 [98747]
        Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
      4. 884886Domain d1s97d2: 1s97 D:1-240 [98749]
        Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
        complexed with ca, dct
    12. Domains for 1s9f:
      1. 884852Domain d1s9fa2: 1s9f A:2-240 [118914]
        Other proteins in same PDB: d1s9fa1, d1s9fb1, d1s9fc1, d1s9fd1
        automatically matched to d1jx4a2
        complexed with ca, ddy, mg
      2. 884853Domain d1s9fb2: 1s9f B:2-240 [118916]
        Other proteins in same PDB: d1s9fa1, d1s9fb1, d1s9fc1, d1s9fd1
        automatically matched to d1jx4a2
        complexed with ca, ddy, mg
      3. 884854Domain d1s9fc2: 1s9f C:2-240 [118918]
        Other proteins in same PDB: d1s9fa1, d1s9fb1, d1s9fc1, d1s9fd1
        automatically matched to d1jx4a2
        complexed with ca, ddy, mg
      4. 884855Domain d1s9fd2: 1s9f D:2-240 [118920]
        Other proteins in same PDB: d1s9fa1, d1s9fb1, d1s9fc1, d1s9fd1
        automatically matched to d1jx4a2
        complexed with ca, ddy, mg
    13. Domain for 2ago:
    14. Domains for 2agp:
      1. 884896Domain d2agpa2: 2agp A:2-240 [126732]
        Other proteins in same PDB: d2agpa1, d2agpb1
        automatically matched to d1jx4a2
        complexed with ca, dgt, doc, mg
      2. 884897Domain d2agpb2: 2agp B:2-240 [126734]
        Other proteins in same PDB: d2agpa1, d2agpb1
        automatically matched to d1jx4a2
        complexed with ca, dgt, doc, mg
    15. Domain for 2agq:
    16. Domains for 2asd:
      1. 884859Domain d2asda2: 2asd A:2-240 [127249]
        Other proteins in same PDB: d2asda1, d2asdb1
        automatically matched to d1jx4a2
        complexed with 8og, ca, dcp, ddg
      2. 884860Domain d2asdb2: 2asd B:1002-1240 [127251]
        Other proteins in same PDB: d2asda1, d2asdb1
        automatically matched to d1jx4a2
        complexed with 8og, ca, dcp, ddg
    17. Domains for 2asj:
      1. 884902Domain d2asja2: 2asj A:2-240 [127255]
        Other proteins in same PDB: d2asja1, d2asjb1
        automatically matched to d1jx4a2
        complexed with ca, ddg
      2. 884903Domain d2asjb2: 2asj B:1002-1240 [127257]
        Other proteins in same PDB: d2asja1, d2asjb1
        automatically matched to d1jx4a2
        complexed with ca, ddg
    18. Domains for 2asl:
      1. 884908Domain d2asla2: 2asl A:2-240 [127259]
        Other proteins in same PDB: d2asla1, d2aslb1
        automatically matched to d1jx4a2
        complexed with 8og, ca, doc
      2. 884909Domain d2aslb2: 2asl B:1002-1240 [127261]
        Other proteins in same PDB: d2asla1, d2aslb1
        automatically matched to d1jx4a2
        complexed with 8og, ca, doc
    19. Domains for 2atl:
      1. 884910Domain d2atla2: 2atl A:2-240 [127297]
        Other proteins in same PDB: d2atla1, d2atlb1
        automatically matched to d1jx4a2
        complexed with ca, dcp, ddg
      2. 884911Domain d2atlb2: 2atl B:1002-1240 [127299]
        Other proteins in same PDB: d2atla1, d2atlb1
        automatically matched to d1jx4a2
        complexed with ca, dcp, ddg
    20. Domains for 2au0:
      1. 884918Domain d2au0a2: 2au0 A:2-240 [127319]
        Other proteins in same PDB: d2au0a1, d2au0b1
        automatically matched to d1jx4a2
        complexed with ca, ddg
      2. 884919Domain d2au0b2: 2au0 B:1002-1240 [127321]
        Other proteins in same PDB: d2au0a1, d2au0b1
        automatically matched to d1jx4a2
        complexed with ca, ddg
    21. Domain for 2bq3:
    22. Domain for 2bqr:
    23. Domain for 2bqu:
    24. Domain for 2br0:
    25. Domain for 2c22:
    26. Domain for 2c28:
    27. Domain for 2c2d:
    28. Domain for 2c2e:
    29. Domain for 2c2r:
    30. Domain for 2ibk:
    31. Domain for 2imw:
    32. Domain for 2j6s:
    33. Domain for 2j6t:
    34. Domain for 2j6u:
    35. Domain for 2jef:
    36. Domain for 2jeg:
    37. Domain for 2jei:
    38. Domain for 2jej:
    39. Domain for 2r8g:
    40. Domain for 2r8h:
    41. Domain for 2r8i:
    42. Domain for 2rdi:
    43. Domains for 2rdj:
      1. 884872Domain d2rdja2: 2rdj A:1-240 [151931]
        Other proteins in same PDB: d2rdja1, d2rdjb1
        automatically matched to d1jx4a2
        complexed with ca, gol, tmp
      2. 884873Domain d2rdjb2: 2rdj B:1-240 [151933]
        Other proteins in same PDB: d2rdja1, d2rdjb1
        automatically matched to d1jx4a2
        complexed with ca, gol, tmp
    44. Domain for 2uvr:
    45. Domain for 2uvu:
    46. Domain for 2uvv:
    47. Domain for 2uvw:
    48. Domains for 2v9w:
      1. 884916Domain d2v9wa2: 2v9w A:1-240 [152812]
        Other proteins in same PDB: d2v9wa1, d2v9wb1
        automatically matched to d1jx4a2
        complexed with ca, dct, dft
      2. 884917Domain d2v9wb2: 2v9w B:1-240 [152814]
        Other proteins in same PDB: d2v9wa1, d2v9wb1
        automatically matched to d1jx4a2
        complexed with ca, dct, dft
    49. Domains for 2va2:
      1. 884906Domain d2va2a2: 2va2 A:1-240 [152816]
        Other proteins in same PDB: d2va2a1, d2va2b1
        automatically matched to d1jx4a2
        complexed with ca, dct, dft
      2. 884907Domain d2va2b2: 2va2 B:1-240 [152818]
        Other proteins in same PDB: d2va2a1, d2va2b1
        automatically matched to d1jx4a2
        complexed with ca, dct, dft
    50. Domain for 2va3:
  3. 884920Sulfolobus acidocaldarius Brock et al. 1972 (Sulfolobus acidocaldarius) [TaxId:2285] [160954] (3 PDB entries)
    1. Domain for 3bq0:
    2. Domain for 3bq1:
    3. Domain for 3bq2:

More info for Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain

Timeline for Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain: