Lineage for Protein: DinB homolog (DBH)

  1. Root: SCOPe 2.07
  2. 2568173Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)
  3. 2571153Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 2571154Superfamily e.8.1: DNA/RNA polymerases [56672] (8 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 2572686Family e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain [100888] (5 proteins)
    contains a distinct 'fingers' domain possibly related to the C-terminal subdomain of hypothetical protein Ta1206 (1qw2)
  6. 2572687Protein DinB homolog (DBH) [100889] (3 species)

Species:

  1. 2572688Sulfolobus acidocaldarius [TaxId:2285] [160954] (3 PDB entries)
    1. Domain for 3bq0:
    2. Domain for 3bq1:
    3. Domain for 3bq2:
  2. 2572692Sulfolobus solfataricus [TaxId:2287] [100891] (3 PDB entries)
    1. Domain for 1im4:
    2. Domains for 1k1q:
      1. 2572695Domain d1k1qa2: 1k1q A:1-239 [90383]
        Other proteins in same PDB: d1k1qa1, d1k1qb1
      2. 2572696Domain d1k1qb2: 1k1q B:1-239 [90385]
        Other proteins in same PDB: d1k1qa1, d1k1qb1
    3. Domain for 1k1s:
  3. 2572697Sulfolobus solfataricus, DNA polymerase IV [TaxId:2287] [100890] (41 PDB entries)
    1. Domain for 1jx4:
    2. Domain for 1jxl:
    3. Domain for 1n48:
    4. Domains for 1n56:
      1. 2572729Domain d1n56a2: 1n56 A:1-240 [91681]
        Other proteins in same PDB: d1n56a1, d1n56b1
        protein/DNA complex; complexed with atp, ca, mg
      2. 2572730Domain d1n56b2: 1n56 B:1-240 [91683]
        Other proteins in same PDB: d1n56a1, d1n56b1
        protein/DNA complex; complexed with atp, ca, mg
    5. Domain for 1pm0:
    6. Domain for 1ryr:
    7. Domains for 1rys:
      1. 2572704Domain d1rysa2: 1rys A:1-240 [98112]
        Other proteins in same PDB: d1rysa1, d1rysb1
        protein/DNA complex; complexed with atp, ca, edo, na
      2. 2572705Domain d1rysb2: 1rys B:1-240 [98114]
        Other proteins in same PDB: d1rysa1, d1rysb1
        protein/DNA complex; complexed with atp, ca, edo, na
    8. Domains for 1s0m:
      1. 2572743Domain d1s0ma2: 1s0m A:1-240 [98291]
        Other proteins in same PDB: d1s0ma1, d1s0mb1
        protein/DNA complex; complexed with bap, ca, dtp, mg
      2. 2572744Domain d1s0mb2: 1s0m B:1-240 [98293]
        Other proteins in same PDB: d1s0ma1, d1s0mb1
        protein/DNA complex; complexed with bap, ca, dtp, mg
    9. Domain for 1s0n:
    10. Domains for 1s0o:
      1. 2572709Domain d1s0oa2: 1s0o A:1-240 [98297]
        Other proteins in same PDB: d1s0oa1, d1s0ob1
        protein/DNA complex; complexed with ca, mg, ttp
      2. 2572710Domain d1s0ob2: 1s0o B:1-240 [98299]
        Other proteins in same PDB: d1s0oa1, d1s0ob1
        protein/DNA complex; complexed with ca, mg, ttp
    11. Domain for 1s10:
    12. Domains for 1s97:
      1. 2572723Domain d1s97a2: 1s97 A:1-240 [98743]
        Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
        protein/DNA complex; complexed with ca, dct
      2. 2572724Domain d1s97b2: 1s97 B:1-240 [98745]
        Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
        protein/DNA complex; complexed with ca, dct
      3. 2572725Domain d1s97c2: 1s97 C:1-240 [98747]
        Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
        protein/DNA complex; complexed with ca, dct
      4. 2572726Domain d1s97d2: 1s97 D:1-240 [98749]
        Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
        protein/DNA complex; complexed with ca, dct
    13. Domains for 1s9f:
      1. 2572699Domain d1s9fa2: 1s9f A:1-240 [118914]
        Other proteins in same PDB: d1s9fa1, d1s9fb1, d1s9fc1, d1s9fd1
        automated match to d1jx4a2
        protein/DNA complex; complexed with ca, ddy, mg
      2. 2572700Domain d1s9fb2: 1s9f B:1-240 [118916]
        Other proteins in same PDB: d1s9fa1, d1s9fb1, d1s9fc1, d1s9fd1
        automated match to d1jx4a2
        protein/DNA complex; complexed with ca, ddy, mg
      3. 2572701Domain d1s9fc2: 1s9f C:1-240 [118918]
        Other proteins in same PDB: d1s9fa1, d1s9fb1, d1s9fc1, d1s9fd1
        automated match to d1jx4a2
        protein/DNA complex; complexed with ca, ddy, mg
      4. 2572702Domain d1s9fd2: 1s9f D:1-240 [118920]
        Other proteins in same PDB: d1s9fa1, d1s9fb1, d1s9fc1, d1s9fd1
        automated match to d1jx4a2
        protein/DNA complex; complexed with ca, ddy, mg
    14. Domain for 2ago:
    15. Domains for 2agp:
      1. 2572754Domain d2agpa2: 2agp A:2-240 [126732]
        Other proteins in same PDB: d2agpa1, d2agpb1
        automatically matched to d1jx4a2
        protein/DNA complex; complexed with ca, dgt, mg
      2. 2572755Domain d2agpb2: 2agp B:2-240 [126734]
        Other proteins in same PDB: d2agpa1, d2agpb1
        automatically matched to d1jx4a2
        protein/DNA complex; complexed with ca, dgt, mg
    16. Domain for 2agq:
    17. Domains for 2asd:
      1. 2572706Domain d2asda2: 2asd A:2-240 [127249]
        Other proteins in same PDB: d2asda1, d2asda3, d2asdb1, d2asdb3
        automated match to d1jx4a2
        protein/DNA complex; complexed with ca, dcp
      2. 2572707Domain d2asdb2: 2asd B:1002-1240 [127251]
        Other proteins in same PDB: d2asda1, d2asda3, d2asdb1, d2asdb3
        automated match to d1jx4a2
        protein/DNA complex; complexed with ca, dcp
    18. Domains for 2asj:
      1. 2572737Domain d2asja2: 2asj A:2-240 [127255]
        Other proteins in same PDB: d2asja1, d2asja3, d2asjb1, d2asjb3
        automated match to d1jx4a2
        protein/DNA complex; complexed with ca
      2. 2572738Domain d2asjb2: 2asj B:1002-1240 [127257]
        Other proteins in same PDB: d2asja1, d2asja3, d2asjb1, d2asjb3
        automated match to d1jx4a2
        protein/DNA complex; complexed with ca
    19. Domains for 2asl:
      1. 2572749Domain d2asla2: 2asl A:2-240 [127259]
        Other proteins in same PDB: d2asla1, d2asla3, d2aslb1, d2aslb3
        automated match to d1jx4a2
        protein/DNA complex; complexed with ca
      2. 2572750Domain d2aslb2: 2asl B:1002-1240 [127261]
        Other proteins in same PDB: d2asla1, d2asla3, d2aslb1, d2aslb3
        automated match to d1jx4a2
        protein/DNA complex; complexed with ca
    20. Domain for 2bq3:
    21. Domain for 2bqr:
    22. Domain for 2bqu:
    23. Domain for 2br0:
    24. Domains for 2ia6:
      1. 2572727Domain d2ia6a1: 2ia6 A:1-240 [204760]
        Other proteins in same PDB: d2ia6a2, d2ia6b2
        automated match to d1jx4a2
        protein/DNA complex; complexed with atp, bap, ca, edo, gol, po4
      2. 2572728Domain d2ia6b1: 2ia6 B:1-240 [204762]
        Other proteins in same PDB: d2ia6a2, d2ia6b2
        automated match to d1jx4a2
        protein/DNA complex; complexed with atp, bap, ca, edo, gol, po4
    25. Domain for 2ibk:
    26. Domain for 2imw:
    27. Domain for 2r8g:
    28. Domain for 2r8h:
    29. Domain for 2r8i:
    30. Domain for 2rdi:
    31. Domains for 2rdj:
      1. 2572747Domain d2rdja2: 2rdj A:1-240 [151931]
        Other proteins in same PDB: d2rdja1, d2rdjb1
        automated match to d1jx4a2
        protein/DNA complex; complexed with ca, gol, tmp
      2. 2572748Domain d2rdjb2: 2rdj B:1-240 [151933]
        Other proteins in same PDB: d2rdja1, d2rdjb1
        automated match to d1jx4a2
        protein/DNA complex; complexed with ca, gol, tmp
    32. Domains for 2xcp:
      1. 2572741Domain d2xcpa1: 2xcp A:1-240 [244481]
        Other proteins in same PDB: d2xcpa2, d2xcpb2, d2xcpb3
        automated match to d2v4ra1
        protein/DNA complex; protein/RNA complex; complexed with dcp, mg
      2. 2572742Domain d2xcpb1: 2xcp B:1-240 [244483]
        Other proteins in same PDB: d2xcpa2, d2xcpb2, d2xcpb3
        automated match to d2v4ra1
        protein/DNA complex; protein/RNA complex; complexed with dcp, mg
    33. Domain for 3fds:
    34. Domain for 3pr4:
    35. Domain for 3pr5:
    36. Domain for 3qz7:
    37. Domain for 3qz8:
    38. Domain for 4juz:
    39. Domain for 4jv0:
    40. Domain for 4jv1:
    41. Domain for 4jv2:

More info for Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain

Timeline for Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain:

  • Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain first appeared in SCOP 1.67
  • Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain appears in SCOPe 2.06