SCOPe 2.08: Protein: DinB homolog (DBH)

Lineage for Protein: DinB homolog (DBH)

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

Fold d.240: Lesion bypass DNA polymerase (Y-family), little finger domain [100878] (1 superfamily)
beta-alpha-beta(2)-alpha-beta; antiparallel beta-sheet: order 1423; "reversed" ferredoxin-like topology

Superfamily d.240.1: Lesion bypass DNA polymerase (Y-family), little finger domain [100879] (2 families)
Family d.240.1.1: Lesion bypass DNA polymerase (Y-family), little finger domain [100880] (5 proteins)
Protein DinB homolog (DBH) [100881] (3 species)

Species:

Sulfolobus acidocaldarius [TaxId:2285] [160394] (3 PDB entries)
1. Domain for 3bq0:
  - Domain d3bq0a1: 3bq0 A:242-344 [155491]
    Other proteins in same PDB: d3bq0a2
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca
2. Domain for 3bq1:
  - Domain d3bq1a1: 3bq1 A:242-344 [155493]
    Other proteins in same PDB: d3bq1a2
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca, dg3
3. Domain for 3bq2:
  - Domain d3bq2a1: 3bq2 A:242-344 [155495]
    Other proteins in same PDB: d3bq2a2
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca
Sulfolobus solfataricus [TaxId:2287] [100883] (2 PDB entries)
1. Domains for 1k1q:
  1. Domain d1k1qa1: 1k1q A:240-344 [90382]
    Other proteins in same PDB: d1k1qa2, d1k1qb2
  2. Domain d1k1qb1: 1k1q B:240-344 [90384]
    Other proteins in same PDB: d1k1qa2, d1k1qb2
2. Domain for 1k1s:
  - Domain d1k1sa1: 1k1s A:240-344 [90386]
    Other proteins in same PDB: d1k1sa2
Sulfolobus solfataricus, DNA polymerase IV [TaxId:2287] [100882] (35 PDB entries)
1. Domain for 1jx4:
  - Domain d1jx4a1: 1jx4 A:241-341 [90378]
    Other proteins in same PDB: d1jx4a2
    protein/DNA complex; complexed with adi, ca, mg
2. Domain for 1jxl:
  - Domain d1jxla1: 1jxl A:241-341 [90380]
    Other proteins in same PDB: d1jxla2
    protein/DNA complex; complexed with ca, dg3, edo, mg
3. Domain for 1n48:
  - Domain d1n48a1: 1n48 A:241-342 [91615]
    Other proteins in same PDB: d1n48a2
    protein/DNA complex; complexed with atp, ca
4. Domains for 1n56:
  1. Domain d1n56a1: 1n56 A:241-341 [91680]
    Other proteins in same PDB: d1n56a2, d1n56b2
    protein/DNA complex; complexed with atp, ca, mg
  2. Domain d1n56b1: 1n56 B:241-341 [91682]
    Other proteins in same PDB: d1n56a2, d1n56b2
    protein/DNA complex; complexed with atp, ca, mg
5. Domain for 1pm0:
  - Domain d1pm0a2: 1pm0 A:241-341 [302895]
    Other proteins in same PDB: d1pm0a1
    automated match to d1jx4a1
    complexed with atp, ca
6. Domain for 1ryr:
  - Domain d1ryra1: 1ryr A:241-341 [98109]
    Other proteins in same PDB: d1ryra2
    protein/DNA complex; complexed with atp, ca
7. Domains for 1rys:
  1. Domain d1rysa1: 1rys A:241-341 [98111]
    Other proteins in same PDB: d1rysa2, d1rysb2
    protein/DNA complex; complexed with atp, ca, edo, na
  2. Domain d1rysb1: 1rys B:241-341 [98113]
    Other proteins in same PDB: d1rysa2, d1rysb2
    protein/DNA complex; complexed with atp, ca, edo, na
8. Domains for 1s0m:
  1. Domain d1s0ma1: 1s0m A:241-341 [98290]
    Other proteins in same PDB: d1s0ma2, d1s0mb2
    protein/DNA complex; complexed with bap, ca, dtp, mg
  2. Domain d1s0mb1: 1s0m B:241-341 [98292]
    Other proteins in same PDB: d1s0ma2, d1s0mb2
    protein/DNA complex; complexed with bap, ca, dtp, mg
9. Domain for 1s0n:
  - Domain d1s0na1: 1s0n A:241-341 [98294]
    Other proteins in same PDB: d1s0na2
    protein/DNA complex; complexed with ca, dcp
10. Domains for 1s0o:
  1. Domain d1s0oa1: 1s0o A:241-341 [98296]
    Other proteins in same PDB: d1s0oa2, d1s0ob2
    protein/DNA complex; complexed with ca, mg, ttp
  2. Domain d1s0ob1: 1s0o B:241-341 [98298]
    Other proteins in same PDB: d1s0oa2, d1s0ob2
    protein/DNA complex; complexed with ca, mg, ttp
11. Domain for 1s10:
  - Domain d1s10a1: 1s10 A:241-341 [98327]
    Other proteins in same PDB: d1s10a2
    protein/DNA complex; complexed with ca, dcp
12. Domains for 1s97:
  1. Domain d1s97a1: 1s97 A:241-341 [98742]
    Other proteins in same PDB: d1s97a2, d1s97b2, d1s97c2, d1s97d2
    protein/DNA complex; complexed with ca, dct
  2. Domain d1s97b1: 1s97 B:241-341 [98744]
    Other proteins in same PDB: d1s97a2, d1s97b2, d1s97c2, d1s97d2
    protein/DNA complex; complexed with ca, dct
  3. Domain d1s97c1: 1s97 C:241-341 [98746]
    Other proteins in same PDB: d1s97a2, d1s97b2, d1s97c2, d1s97d2
    protein/DNA complex; complexed with ca, dct
  4. Domain d1s97d1: 1s97 D:241-341 [98748]
    Other proteins in same PDB: d1s97a2, d1s97b2, d1s97c2, d1s97d2
    protein/DNA complex; complexed with ca, dct
13. Domains for 1s9f:
  1. Domain d1s9fa1: 1s9f A:241-341 [118913]
    Other proteins in same PDB: d1s9fa2, d1s9fb2, d1s9fc2, d1s9fd2
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca, ddy, mg
  2. Domain d1s9fb1: 1s9f B:241-341 [118915]
    Other proteins in same PDB: d1s9fa2, d1s9fb2, d1s9fc2, d1s9fd2
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca, ddy, mg
  3. Domain d1s9fc1: 1s9f C:241-341 [118917]
    Other proteins in same PDB: d1s9fa2, d1s9fb2, d1s9fc2, d1s9fd2
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca, ddy, mg
  4. Domain d1s9fd1: 1s9f D:241-341 [118919]
    Other proteins in same PDB: d1s9fa2, d1s9fb2, d1s9fc2, d1s9fd2
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca, ddy, mg
14. Domain for 2ago:
  - Domain d2agoa1: 2ago A:241-341 [126729]
    Other proteins in same PDB: d2agoa2
    automatically matched to d1n48a1
    protein/DNA complex; complexed with ca, mg, pop
15. Domains for 2agp:
  1. Domain d2agpa1: 2agp A:241-341 [126731]
    Other proteins in same PDB: d2agpa2, d2agpb2
    automatically matched to d1n48a1
    protein/DNA complex; complexed with ca, dgt, mg
  2. Domain d2agpb1: 2agp B:241-341 [126733]
    Other proteins in same PDB: d2agpa2, d2agpb2
    automatically matched to d1n48a1
    protein/DNA complex; complexed with ca, dgt, mg
16. Domain for 2agq:
  - Domain d2agqa1: 2agq A:241-341 [126735]
    Other proteins in same PDB: d2agqa2
    automatically matched to d1n48a1
    protein/DNA complex; complexed with ca, dtp, mg
17. Domains for 2asd:
  1. Domain d2asda1: 2asd A:241-341 [127248]
    Other proteins in same PDB: d2asda2, d2asda3, d2asdb2, d2asdb3
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca, dcp
  2. Domain d2asdb1: 2asd B:1241-1341 [127250]
    Other proteins in same PDB: d2asda2, d2asda3, d2asdb2, d2asdb3
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca, dcp
18. Domains for 2asj:
  1. Domain d2asja1: 2asj A:241-341 [127254]
    Other proteins in same PDB: d2asja2, d2asja3, d2asjb2, d2asjb3
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca
  2. Domain d2asjb1: 2asj B:1241-1341 [127256]
    Other proteins in same PDB: d2asja2, d2asja3, d2asjb2, d2asjb3
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca
19. Domains for 2asl:
  1. Domain d2asla1: 2asl A:241-341 [127258]
    Other proteins in same PDB: d2asla2, d2asla3, d2aslb2, d2aslb3
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca
  2. Domain d2aslb1: 2asl B:1241-1341 [127260]
    Other proteins in same PDB: d2asla2, d2asla3, d2aslb2, d2aslb3
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca
20. Domains for 2ia6:
  1. Domain d2ia6a2: 2ia6 A:241-341 [204761]
    Other proteins in same PDB: d2ia6a1, d2ia6b1
    automated match to d1jx4a1
    protein/DNA complex; complexed with atp, bap, ca, edo, gol, po4
  2. Domain d2ia6b2: 2ia6 B:241-341 [204763]
    Other proteins in same PDB: d2ia6a1, d2ia6b1
    automated match to d1jx4a1
    protein/DNA complex; complexed with atp, bap, ca, edo, gol, po4
21. Domain for 2ibk:
  - Domain d2ibka1: 2ibk A:241-341 [147598]
    Other proteins in same PDB: d2ibka2
    automated match to d1jx4a1
    protein/DNA complex; complexed with bap, ca, edo, gol, pop
22. Domain for 2imw:
  - Domain d2imwp1: 2imw P:241-348 [137519]
    Other proteins in same PDB: d2imwp2
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca, dds, edo
23. Domain for 2r8g:
  - Domain d2r8ga1: 2r8g A:241-341 [151717]
    Other proteins in same PDB: d2r8ga2
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca, dgt
24. Domain for 2r8h:
  - Domain d2r8ha1: 2r8h A:241-341 [151719]
    Other proteins in same PDB: d2r8ha2
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca, dgt
25. Domain for 2r8i:
  - Domain d2r8ia1: 2r8i A:241-341 [151721]
    Other proteins in same PDB: d2r8ia2
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca, dtp
26. Domain for 2rdi:
  - Domain d2rdia1: 2rdi A:241-352 [151928]
    Other proteins in same PDB: d2rdia2
    automated match to d1jx4a1
    protein/DNA complex; complexed with gol, peg
27. Domains for 2rdj:
  1. Domain d2rdja1: 2rdj A:241-341 [151930]
    Other proteins in same PDB: d2rdja2, d2rdjb2
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca, gol, tmp
  2. Domain d2rdjb1: 2rdj B:241-341 [151932]
    Other proteins in same PDB: d2rdja2, d2rdjb2
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca, gol, tmp
28. Domain for 3fds:
  - Domain d3fdsa2: 3fds A:241-352 [209861]
    Other proteins in same PDB: d3fdsa1, d3fdsd1, d3fdsd2
    automated match to d1n48a1
    protein/DNA complex; complexed with 1pe, edo, gol, peg, pge
29. Domain for 3pr4:
  - Domain d3pr4a2: 3pr4 A:241-341 [233266]
    Other proteins in same PDB: d3pr4a1
    automated match to d1jx4a1
    protein/DNA complex; complexed with atp, ca; mutant
30. Domain for 3qz7:
  - Domain d3qz7a2: 3qz7 A:241-341 [233380]
    Other proteins in same PDB: d3qz7a1
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca, dcp
31. Domain for 3qz8:
  - Domain d3qz8a2: 3qz8 A:241-341 [233382]
    Other proteins in same PDB: d3qz8a1
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca, dcp
32. Domain for 4juz:
  - Domain d4juza2: 4juz A:241-341 [235050]
    Other proteins in same PDB: d4juza1
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca, dgt
33. Domain for 4jv0:
  - Domain d4jv0a2: 4jv0 A:241-341 [235052]
    Other proteins in same PDB: d4jv0a1
    automated match to d1jx4a1
    protein/DNA complex; complexed with ca, dtp
34. Domain for 4jv1:
  - Domain d4jv1a2: 4jv1 A:241-341 [253115]
    Other proteins in same PDB: d4jv1a1
    automated match to d4juza2
    protein/DNA complex; complexed with ca, dgt
35. Domain for 4jv2:
  - Domain d4jv2a2: 4jv2 A:241-341 [253117]
    Other proteins in same PDB: d4jv2a1
    automated match to d4juza2
    protein/DNA complex; complexed with ca, dtp

More info for Protein DinB homolog (DBH) from d.240.1.1: Lesion bypass DNA polymerase (Y-family), little finger domain

Timeline for Protein DinB homolog (DBH) from d.240.1.1: Lesion bypass DNA polymerase (Y-family), little finger domain:

Protein DinB homolog (DBH) from d.240.1.1: Lesion bypass DNA polymerase (Y-family), little finger domain first appeared in SCOP 1.67
Protein DinB homolog (DBH) from d.240.1.1: Lesion bypass DNA polymerase (Y-family), little finger domain appears in SCOPe 2.07