SCOP 1.67: Domain d1vhya2: 1vhy A:74-247

Lineage for d1vhya2 (1vhy A:74-247)

1. Root: SCOP 1.67

2. Class c: Alpha and beta proteins (a/b) [51349] (130 folds)

3. Fold c.116: alpha/beta knot [75216] (1 superfamily)
   core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot

4. Superfamily c.116.1: alpha/beta knot [75217] (5 families)
   known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
   all known members have dimeric structures

5. Family c.116.1.5: YggJ C-terminal domain-like [89632] (2 proteins)
   contains extra strand (3) in the parallel beta-sheet, order 321546; similar dimerisation to the MTH1 domain

6. Protein Hypothetical protein HI0303 [89633] (1 species)

7. Species Haemophilus influenzae [TaxId:727] [89634] (2 PDB entries)

8. Domain d1vhya2: 1vhy A:74-247 [100715]
   Other proteins in same PDB: d1vhya1, d1vhyb1

Details for d1vhya2

PDB Entry: 1vhy, 1.9 Å

PDB Description: crystal structure of haemophilus influenzae protein hi0303, pfam duf558

SCOP Domain Sequences for d1vhya2:

Sequence, based on SEQRES records:

>d1vhya2 c.116.1.5 (A:74-247) Hypothetical protein HI0303 {Haemophilus influenzae}
keshlkihlgqvisrgermeftiqksvelgvnvitplwsercgvkldaermdkkiqqwqk
iaiaaceqcgrnivpeirplmklqdwcaendgalklnlhprahysiktlptipaggvrll
igsegglsaqeiaqteqqgfteillgkrvlrtetaslaaisalqicfgdlgeeg

Sequence, based on observed residues (ATOM records):

>d1vhya2 c.116.1.5 (A:74-247) Hypothetical protein HI0303 {Haemophilus influenzae}
keshlkihlgqvirmeftiqksvelgvnvitplwsercgvkldaermdkkiqqwqkiaia
aceqcgrnivpeirplmklqdwcaendgalklnlhprahysiktlptipaggvrlligse
gglsaqeiaqteqqgfteillgkrvlrtetaslaaisalqicfgdlgeeg

Timeline for d1vhya2:

• d1vhya2 is new in SCOP 1.67
  
• d1vhya2 appears in SCOP 1.69
  
• d1vhya2 appears in the current release, SCOPe 2.08