Lineage for d5fayb_ (5fay B:)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2850785Fold c.7: PFL-like glycyl radical enzymes [51997] (1 superfamily)
    contains: barrel, closed; n=10, S=10; accommodates a hairpin loop inside the barrel
  4. 2850786Superfamily c.7.1: PFL-like glycyl radical enzymes [51998] (6 families) (S)
    duplication: the N- and C-terminal halves have similar topologies
  5. 2850879Family c.7.1.0: automated matches [275322] (1 protein)
    not a true family
  6. 2850880Protein automated matches [275324] (7 species)
    not a true protein
  7. 2850906Species Desulfovibrio alaskensis [TaxId:207559] [323257] (7 PDB entries)
  8. 2850912Domain d5fayb_: 5fay B: [323361]
    Other proteins in same PDB: d5faya2
    automated match to d5a0uh_
    complexed with cht, mli, na; mutant

Details for d5fayb_

PDB Entry: 5fay (more details), 1.9 Å

PDB Description: y208f mutant of choline tma-lyase
PDB Compounds: (B:) Choline trimethylamine-lyase

SCOPe Domain Sequences for d5fayb_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5fayb_ c.7.1.0 (B:) automated matches {Desulfovibrio alaskensis [TaxId: 207559]}
enflkqvpsitvqravaitkiakenpglpkpllraktfryccetaplviqdhelivgspn
gapragafspevawrwlqdeldtigsrpqdpfyiseedkkvlreevfpfwqnksvdefce
gqyreadlwemsgesfvsdcsfhavngggdsnpgydvilmkkgmldiqrearekleqldy
anpedidkiyfyksvietaegvmiyarrlsayaaelaaretdprrkaelqkisevnarvp
ahapsnfweaiqavwtvesllvveenqtgmsigrvdqymypfyradidsgrlteyeafdl
agcmlvkmsemmwitsegaskffagyqpfvnmcvggvtreghdatndltymlmdavrhvr
iyqptlatrvhnkspqkylkkivdvirsgmgfpavhfddahikmmlakgvsiedardycl
mgcvepqksgrlyqwtstgytqwpicielvlnhgvplwygkkvtpdmgdlsqydtyekfe
aavkeqirwitkntsvatvisqrahrelapkplmslmyegcmesgrdvsaggamynfgpg
vvwsglatyvdsmaaikklvyddrkytlaqlnealkadfagydqiladclaapkygnddd
yadmiaadlvhftetehrkyktlysvlshgtlsisnntpfgqllgasangrrawmplsdg
isptqgadykgptaiiksvskmandnmnigmvhnfklmsglldtpegenglitlirtacm
lgngemqfnyldnellldaqkhpekyrdlvvrvagysaffvelckdvqdeiisrtmlhgf

SCOPe Domain Coordinates for d5fayb_:

Click to download the PDB-style file with coordinates for d5fayb_.
(The format of our PDB-style files is described here.)

Timeline for d5fayb_: