Lineage for d1rdra_ (1rdr A:)

  1. Root: SCOPe 2.08
  2. 3012399Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
  3. 3016464Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 3016465Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 3017418Family e.8.1.4: RNA-dependent RNA-polymerase [56694] (3 proteins)
  6. 3017426Protein Viral RNA polymerase [56695] (17 species)
  7. 3017695Species Poliovirus type 1, strain Mahoney [TaxId:12080] [56696] (12 PDB entries)
    Uniprot P03300 1748-2208
  8. 3017697Domain d1rdra_: 1rdr A: [43116]
    complexed with ca
    fragment; missing more than one-third of the common structure and/or sequence
    missing some secondary structures that made up less than one-third of the common domain

Details for d1rdra_

PDB Entry: 1rdr (more details), 2.4 Å

PDB Description: poliovirus 3d polymerase
PDB Compounds: (A:) poliovirus 3d polymerase

SCOPe Domain Sequences for d1rdra_:

Sequence, based on SEQRES records: (download)

>d1rdra_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
vgypiinapsktklepsafhyvfegvkepavltkndprlktdfeeaifskyvgnkitevd
eymkeavdhyagqlmsldinteqmcledamygtdglealdlstsagypyvamgkkkrdil
nkqtrdtkemqklldtyginlplvtyvkdelrsktkveqgksrlieasslndsvamrmaf
gnlyaafhknpgvitgsavgcdpdlfwskipvlmeeklfafdytgydaslspawfealkm
vlekigfgdrvdyidylnhshhlyknktycvkggmpsgcsgtsifnsminnliirtlllk
tykgidldhlkmiaygddviasyphevdasllaqsgkdygltmtpadksatfetvtwenv
tflkrffradekypflihpvmpmkeihesirwtkdprntqdhvrslcllawhngeeeynk
flakirsvpigralllpeystlyrrwldsf

Sequence, based on observed residues (ATOM records): (download)

>d1rdra_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
vgypiinapsktklepsafhyvfegvitevdeymkeavdhyagqlmsldinteqmclnds
vamrmafgnlyaafhknpgvitgsavgcdpdlfwskipvlmeeklfafdytgydaslspa
wfealkmvlekigfgdrvdyidylnsgtsifnsminnliirtlllktykgidldhlkmia
ygddviasyphevdasllaqsgkdygltmtpadksatfetvtwenvtflkrffradekyp
flihpvmpmkeihesirwtkdprntqdhvrslcllawhngeeeynkflakirsvpigral
llpeystlyrrwldsf

SCOPe Domain Coordinates for d1rdra_:

Click to download the PDB-style file with coordinates for d1rdra_.
(The format of our PDB-style files is described here.)

Timeline for d1rdra_: