Lineage for d1m13a_ (1m13 A:)

  1. Root: SCOPe 2.05
  2. 1715731Class a: All alpha proteins [46456] (286 folds)
  3. 1747085Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
    multihelical; 3 layers or orthogonally packed helices
  4. 1747086Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families) (S)
  5. 1747087Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (34 proteins)
  6. 1747752Protein Pregnane x receptor, PXR [63624] (1 species)
  7. 1747753Species Human (Homo sapiens) [TaxId:9606] [63625] (15 PDB entries)
  8. 1747756Domain d1m13a_: 1m13 A: [84746]
    complexed with hyf

Details for d1m13a_

PDB Entry: 1m13 (more details), 2.15 Å

PDB Description: Crystal Structure of the Human Pregane X Receptor Ligand Binding Domain in Complex with Hyperforin, a Constituent of St. John's Wort
PDB Compounds: (A:) orphan nuclear receptor pxr

SCOPe Domain Sequences for d1m13a_:

Sequence, based on SEQRES records: (download)

>d1m13a_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo sapiens) [TaxId: 9606]}
glteeqrmmirelmdaqmktfdttfshfknfrlpgvlssgcelpeslqapsreeaakwsq
vrkdlcslkvslqlrgedgsvwnykppadsggkeifsllphmadmstymfkgiisfakvi
syfrdlpiedqisllkgaafelcqlrfntvfnaetgtwecgrlsycledtaggfqqllle
pmlkfhymlkklqlheeeyvlmqaislfspdrpgvlqhrvvdqlqeqfaitlksyiecnr
pqpahrflflkimamltelrsinaqhtqrllriqdihpfatplmqelfgitgs

Sequence, based on observed residues (ATOM records): (download)

>d1m13a_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo sapiens) [TaxId: 9606]}
glteeqrmmirelmdaqmktfdttfshfknfrlpgvkwsqvrkdlcslkvslqlrgedgs
vwnykppadsggkeifsllphmadmstymfkgiisfakvisyfrdlpiedqisllkgaaf
elcqlrfntvfnaetgtwecgrlsycledtaggfqqlllepmlkfhymlkklqlheeeyv
lmqaislfspdrpgvlqhrvvdqlqeqfaitlksyiecnrpqpahrflflkimamltelr
sinaqhtqrllriqdihpfatplmqelfgitgs

SCOPe Domain Coordinates for d1m13a_:

Click to download the PDB-style file with coordinates for d1m13a_.
(The format of our PDB-style files is described here.)

Timeline for d1m13a_: