SCOPe 2.08: Family c.56.5.4: Bacterial dinuclear zinc exopeptidases

Lineage for Family c.56.5.4: Bacterial dinuclear zinc exopeptidases

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.56: Phosphorylase/hydrolase-like [53162] (8 superfamilies)
core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
Superfamily c.56.5: Zn-dependent exopeptidases [53187] (10 families)
core: mixed beta-sheet of 8 strands, order 12435867; strands 2, 6 & 7 are antiparallel to the rest
Family c.56.5.4: Bacterial dinuclear zinc exopeptidases [53204] (18 proteins)

Proteins:

Allantoate amidohydrolase AllC catalytic domain [142514] (1 species)
- Species Escherichia coli [TaxId:562] [142515] (2 PDB entries)
  Uniprot P77425 2-210,328-411
Aminoacylase-1, catalytic domain [102511] (1 species)
- Species Human (Homo sapiens) [TaxId:9606] [102512] (1 PDB entry)
Aminopeptidase [53205] (2 species)
1. Species Aeromonas proteolytica [TaxId:671] [53206] (17 PDB entries)
  Uniprot Q01693
  synonym: Vibrio proteolyticus
2. Species Streptomyces griseus [TaxId:1911] [53207] (5 PDB entries)
Aminopeptidase PepV [82450] (1 species)
unspecific amino dipeptidase
- Species Lactobacillus delbrueckii [TaxId:1584] [82451] (1 PDB entry)
Aminopeptidase YpdE [142520] (1 species)
- Species Shigella flexneri [TaxId:623] [142521] (1 PDB entry)
  Uniprot Q83K87 1-66,148-345
  hypothetical protein SF2450 (PDB)/SF2449.1 (UniProt)
Carboxypeptidase G2, catalytic domain [53208] (1 species)
- Species Pseudomonas sp., strain rs-16 [TaxId:306] [53209] (1 PDB entry)
Deblocking aminopeptidase YhfE [142512] (1 species)
contains insert beta-barrel domain
- Species Bacillus cereus [TaxId:1396] [142513] (1 PDB entry)
  Uniprot Q81HB5 3-73,187-348
  BC0901
Endoglucanase TM1049 [142516] (1 species)
- Species Thermotoga maritima [TaxId:2336] [142517] (1 PDB entry)
  Uniprot Q9X0D9 1-64,149-339
Frv operon protein FrvX, catalytic domain [117659] (1 species)
- Species Pyrococcus horikoshii [TaxId:53953] [117660] (3 PDB entries)
  Uniprot O59196 # PH1527
Hypothetical protein YsdC, catalytic domain [102513] (1 species)
contains insert beta-barrel domain
- Species Bacillus subtilis [TaxId:1423] [102514] (1 PDB entry)
IAA-amino acid hydrolase, catalytic domain [117663] (1 species)
- Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [117664] (2 PDB entries)
  Uniprot P54970 37-428
Peptidase T (tripeptidase), catalytic domain [75250] (2 species)
1. Species Escherichia coli [TaxId:562] [102506] (1 PDB entry)
2. Species Salmonella typhimurium [TaxId:90371] [75251] (1 PDB entry)
Peptidase-like beta-alanine synthase, catalytic domain [102507] (1 species)
- Species Yeast (Saccharomyces kluyveri) [TaxId:4934] [102508] (2 PDB entries)
Probable aminopeptidase ApeA [117661] (1 species)
contains insert beta-barrel domain
- Species Lyme disease spirochete (Borrelia burgdorferi) [TaxId:139] [117662] (1 PDB entry)
  Uniprot Q45055
Protein YxeP [142518] (1 species)
- Species Bacillus subtilis [TaxId:1423] [142519] (1 PDB entry)
  Uniprot P54955 4-177,293-379
Putative endoglucanase TM1048, catalytic domain [102515] (1 species)
contains insert beta-barrel domain
- Species Thermotoga maritima [TaxId:2336] [102516] (1 PDB entry)
Succinyl-diaminopimelate desuccinylase, catalytic domain [102509] (1 species)
- Species Neisseria meningitidis [TaxId:487] [102510] (1 PDB entry)
automated matches [190049] (2 species)
not a true protein
1. Species Streptomyces griseus [TaxId:1911] [186770] (6 PDB entries)
2. Species Vibrio proteolyticus [TaxId:671] [186859] (5 PDB entries)

More info for Family c.56.5.4: Bacterial dinuclear zinc exopeptidases

Timeline for Family c.56.5.4: Bacterial dinuclear zinc exopeptidases:

Family c.56.5.4: Bacterial dinuclear zinc exopeptidases first appeared (with stable ids) in SCOP 1.55, called Family c.56.5.4: Bacterial exopeptidases
Family c.56.5.4: Bacterial dinuclear zinc exopeptidases appears in SCOPe 2.07