SCOPe 2.08: Family b.42.2.1: Ricin B-like

Lineage for Family b.42.2.1: Ricin B-like

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)
Fold b.42: beta-Trefoil [50352] (8 superfamilies)
barrel, closed; n=6, S=12; and a hairpin triplet; meander
duplication: has internal pseudo threefold symmetry
Superfamily b.42.2: Ricin B-like lectins [50370] (4 families)
Family b.42.2.1: Ricin B-like [50371] (11 proteins)

Proteins:

29-kDa galactose-binding lectin [159148] (1 species)
duplication: tadem repeat of two Ricin B-like domains
- Species Common earthworm (Lumbricus terrestris) [TaxId:6398] [159149] (5 PDB entries)
  Uniprot O96048 131-260
Agglutinin MOA, N-terminal domain [159152] (1 species)
- Species Fairy-ring mushroom (Marasmius oreades) [TaxId:181124] [159153] (2 PDB entries)
  Uniprot Q8X123 2-155
Agglutinin-1 chain B [159150] (1 species)
- Species Abrus precatorius [TaxId:3816] [159151] (2 PDB entries)
  Uniprot Q9M6E9 287-420! Uniprot Q9M6E9 421-547
Cytolethal distending toxin subunit A [110207] (2 species)
1. Species Actinobacillus actinomycetemcomitans [TaxId:714] [141329] (1 PDB entry)
  Uniprot O87120 70-222
2. Species Haemophilus ducreyi [TaxId:730] [110208] (1 PDB entry)
  Uniprot O06522 57-223
Cytolethal distending toxin subunit C [110209] (2 species)
1. Species Actinobacillus actinomycetemcomitans [TaxId:714] [141330] (1 PDB entry)
  Uniprot Q7DK11 25-178
2. Species Haemophilus ducreyi [TaxId:730] [110210] (1 PDB entry)
  Uniprot O06524 25-178
Hemagglutinin component Ha1 [101784] (2 species)
1. Species Clostridium botulinum D phage [TaxId:29342] [101785] (1 PDB entry)
2. Species Clostridium botulinum [TaxId:1491] [159147] (3 PDB entries)
Hemolytic lectin CEL-III, domains 1 and 2 [110211] (1 species)
- Species Cucumaria echinata [TaxId:40245] [110212] (4 PDB entries)
  Uniprot Q868M7 11-442
Plant cytotoxin B-chain (lectin) [50372] (5 species)
duplication: consists of two domains of this fold
1. Species Abrus precatorius [TaxId:3816] [50374] (1 PDB entry)
2. Species Castor bean (Ricinus communis), Ricin [TaxId:3988] [50373] (4 PDB entries)
  Uniprot P06750 303-564
3. Species European mistletoe (Viscum album) [TaxId:3972] [50375] (12 PDB entries)
  different sequence variants
  Uniprot Q6ITZ3 266-520; Uniprot P81446 269-531 # 91% sequence identity
4. Species Mongolian snake-gourd (Trichosanthes kirilowii), Lectin 1 [TaxId:3677] [89337] (1 PDB entry)
5. Species Sambucus ebulus, ebulin [TaxId:28503] [50376] (4 PDB entries)
Polypeptide N-acetylgalactosaminyltransferase 1, C-terminal domain [117210] (1 species)
- Species Mouse (Mus musculus) [TaxId:10090] [117211] (1 PDB entry)
  Uniprot O08912
Xylan binding domain, CBM13 (Endo-1,4-beta-xylanase C-terminal domain) [50377] (2 species)
1. Species Streptomyces lividans [TaxId:1916] [74958] (3 PDB entries)
2. Species Streptomyces olivaceoviridis [TaxId:1921] [50378] (11 PDB entries)
automated matches [190608] (4 species)
not a true protein
1. Species Clostridium botulinum [TaxId:1491] [230685] (7 PDB entries)
2. Species Common earthworm (Lumbricus terrestris) [TaxId:6398] [187630] (3 PDB entries)
3. Species European mistletoe (Viscum album) [TaxId:3972] [225471] (7 PDB entries)
4. Species Fairy-ring mushroom (Marasmius oreades) [TaxId:181124] [336588] (1 PDB entry)

More info for Family b.42.2.1: Ricin B-like

Timeline for Family b.42.2.1: Ricin B-like:

Family b.42.2.1: Ricin B-like first appeared (with stable ids) in SCOP 1.55
Family b.42.2.1: Ricin B-like appears in SCOPe 2.07