PDB entry 7nho

View 7nho on RCSB PDB site
Description: Structure of PSII-M
Class: photosynthesis
Keywords: Membrane Protein Biogenesis Assembly Factors Photosystem II, PHOTOSYNTHESIS
Deposited on 2021-02-11, released 2021-05-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-05-05, with a file datestamp of 2021-04-30.
Experiment type: EM
Resolution: 2.66 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Photosystem II protein D1 1
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhoa_
  • Chain 'B':
    Compound: Photosystem II CP47 reaction center protein
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhob_
  • Chain 'C':
    Compound: Photosystem II CP43 reaction center protein
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhoc_
  • Chain 'D':
    Compound: Photosystem II D2 protein
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhod_
  • Chain 'E':
    Compound: Cytochrome b559 subunit alpha
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhoe_
  • Chain 'F':
    Compound: Cytochrome b559 subunit beta
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhof_
  • Chain 'H':
    Compound: Photosystem II reaction center protein H
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhoh_
  • Chain 'I':
    Compound: Photosystem II reaction center protein I
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhoi_
  • Chain 'K':
    Compound: Photosystem II reaction center protein K
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhok_
  • Chain 'L':
    Compound: Photosystem II reaction center protein L
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhol_
  • Chain 'M':
    Compound: Photosystem II reaction center protein M
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhom_
  • Chain 'T':
    Compound: Photosystem II reaction center protein T
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhot_
  • Chain 'X':
    Compound: Photosystem II reaction center X protein
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhox_
  • Chain 'Z':
    Compound: Photosystem II reaction center protein Z
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d7nhoz_
  • Chain 'y':
    Compound: Photosystem II reaction center protein ycf12
    Species: Thermosynechococcus elongatus BP-1 [TaxId:197221]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FE, MN, CL, PHO, CLA, BCR, LHG, BCT, LMG, PL9, HEM

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >7nhoA (A:)
mtttlqrresanlwerfcnwvtstdnrlyvgwfgvimiptllaaticfviafiaappvdi
dgirepvsgsllygnniitgavvpssnaiglhfypiweaasldewlynggpyqliifhfl
lgascymgrqwelsyrlgmrpwicvaysaplasafavfliypigqgsfsdgmplgisgtf
nfmivfqaehnilmhpfhqlgvagvfggalfcamhgslvtsslirettetesanygykfg
qeeetynivaahgyfgrlifqyasfnnsrslhfflaawpvvgvwftalgistmafnlngf
nfnhsvidakgnvintwadiinranlgmevmhernahnfpldlasaesapvamiapsing

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhoA (A:)
sanlwerfcnwvtstdnrlyvgwfgvimiptllaaticfviafiaappvdidgirepvsg
sllygnniitgavvpssnaiglhfypiweaasldewlynggpyqliifhfllgascymgr
qwelsyrlgmrpwicvaysaplasafavfliypigqgsfsdgmplgisgtfnfmivfqae
hnilmhpfhqlgvagvfggalfcamhgslvtsslirettetesanygykfgqeeetyniv
aahgyfgrlifqyasfnnsrslhfflaawpvvgvwftalgistmafnlngfnfnhsvida
kgnvintwadiinranlgmevmhernahnfpldla

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >7nhoB (B:)
mglpwyrvhtvlindpgrliaahlmhtalvagwagsmalyelatfdpsdpvlnpmwrqgm
fvlpfmarlgvtgswsgwsitgetgidpgfwsfegvalahivlsgllflaacwhwvywdl
elfrdprtgepaldlpkmfgihlflagllcfgfgafhltglfgpgmwvsdpygltgsvqp
vapewgpdgfnpynpggvvahhiaagivgiiaglfhilvrppqrlykalrmgnietvlss
siaavffaafvvagtmwygsattpielfgptryqwdssyfqqeinrrvqaslasgatlee
awsaipeklafydyignnpakgglfrtgpmnkgdgiaqawkghavfrnkegeelfvrrmp
affesfpviltdkngvvkadipfrraeskysfeqqgvtvsfyggelngqtftdpptvksy
arkaifgeifefdtetlnsdgifrtsprgwftfahavfallfffghiwhgartlfrdvfs
gidpelspeqvewgfyqkvgdvttrrkeav

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhoB (B:)
glpwyrvhtvlindpgrliaahlmhtalvagwagsmalyelatfdpsdpvlnpmwrqgmf
vlpfmarlgvtgswsgwsitgetgidpgfwsfegvalahivlsgllflaacwhwvywdle
lfrdprtgepaldlpkmfgihlflagllcfgfgafhltglfgpgmwvsdpygltgsvqpv
apewgpdgfnpynpggvvahhiaagivgiiaglfhilvrppqrlykalrmgnietvlsss
iaavffaafvvagtmwygsattpielfgptryqwdssyfqqeinrrvqaslasgatleea
wsaipeklafydyignnpakgglfrtgpmnkgdgiaqawkghavfrnkegeelfvrrmpa
ffesfpviltdkngvvkadipfrraeskysfeqqgvtvsfyggelngqtftdpptvksya
rkaifgeifefdtetlnsdgifrtsprgwftfahavfallfffghiwhgartlfrdvfsg
idpel

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >7nhoC (C:)
mvtlssnsifatnrdqessgfawwagnarlinlsgkllgahvahaglivfwagamtlfel
ahfipekpmyeqgliliphiatlgwgvgpggevvdtfpffvvgvvhlissavlgfggvyh
airgpetleeyssffgydwkdknkmttilgfhlivlgigalllvakamffgglydtwapg
ggdvrvitnptldprvifgyllkspfggegwivsvnnledvvgghiwigliciaggiwhi
lttpfgwarrafiwsgeaylsyslgalsmmgfiatcfvwfnntvypsefygptgpeasqa
qamtflirdqklganvgsaqgptglgkylmrsptgeiifggetmrfwdfrgpwleplrgp
ngldlnkikndiqpwqerraaeymthaplgslnsvggvateinsvnfvsprswlatshfv
laffflvghlwhagraraaaagfekgidresepvlsmpsld

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhoC (C:)
rdqessgfawwagnarlinlsgkllgahvahaglivfwagamtlfelahfipekpmyeqg
liliphiatlgwgvgpggevvdtfpffvvgvvhlissavlgfggvyhairgpetleeyss
ffgydwkdknkmttilgfhlivlgigalllvakamffgglydtwapgggdvrvitnptld
prvifgyllkspfggegwivsvnnledvvgghiwigliciaggiwhilttpfgwarrafi
wsgeaylsyslgalsmmgfiatcfvwfnntvypsefygptgpeasqaqamtflirdqklg
anvgsaqgptglgkylmrsptgeiifggetmrfwdfrgpwleplrgpngldlnkikndiq
pwqerraaeymthaplgslnsvggvateinsvnfvsprswlatshfvlaffflvghlwha
graraaaagfekgidresepvlsmpsld

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >7nhoD (D:)
mtiaigrapaergwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswyt
hglassylegcnfltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgaf
gligfmlrqfeiarlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifr
fllffqgfhnwtlnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqa
eetysmvtanrfwsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfis
qeiraaedpefetfytknlllnegirawmapqdqphenfvfpeevlprgnal

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhoD (D:)
gwfdilddwlkrdrfvfvgwsgillfpcaylalggwltgttfvtswythglassylegcn
fltvavstpansmghsllllwgpeaqgdftrwcqlgglwtfialhgafgligfmlrqfei
arlvgvrpynaiafsapiavfvsvfliyplgqsswffapsfgvaaifrfllffqgfhnwt
lnpfhmmgvagvlggallcaihgatventlfqdgegastfrafnptqaeetysmvtanrf
wsqifgiafsnkrwlhffmlfvpvtglwmsaigvvglalnlrsydfisqeiraaedpefe
tfytknlllnegirawmapqdqphenfvfpeevlprgnal

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >7nhoE (E:)
magttgerpfsdiitsvrywvihsitipalfiagwlfvstglaydvfgtprpdsyyaqeq
rsiplvtdrfeakqqvetfleqlk

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhoE (E:)
rpfsdiitsvrywvihsitipalfiagwlfvstglaydvfgtprpdsyyaqeqrsiplvt
drfeakqqvetfleqlk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >7nhoF (F:)
mtsntpnqepvsypiftvrwvavhtlavptifflgaiaamqfiqr

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhoF (F:)
qepvsypiftvrwvavhtlavptifflgaiaamqfiqr

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >7nhoH (H:)
marrtwlgdilrplnseygkvapgwgttplmavfmglflvflliileiynstlildgvnv
swkalg

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhoH (H:)
arrtwlgdilrplnseygkvapgwgttplmavfmglflvflliileiynstlildgvnvs
wkalg

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >7nhoI (I:)
metlkitvyivvtffvllfvfgflsgdparnpkrkdle

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhoI (I:)
metlkitvyivvtffvllfvfgflsgdparnpkrk

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >7nhoK (K:)
midalvlvaklpeayaifdplvdvlpvipvlflalafvwqaavgfr

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhoK (K:)
klpeayaifdplvdvlpvipvlflalafvwqaavgfr

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7nhoL (L:)
mepnpnrqpvelnrtslylglllilvlallfssyffn

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >7nhoM (M:)
mevnqlgliatalfvlvpsvfliilyvqtesqqkss

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhoM (M:)
mevnqlgliatalfvlvpsvfliilyvqtesqqk

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >7nhoT (T:)
metityvfifaciialfffaiffreppritkk

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhoT (T:)
metityvfifaciialfffaiffrepprit

  • Chain 'X':
    Sequence, based on SEQRES records: (download) 
    >7nhoX (X:)
mtitpslkgffigllsgavvlgltfavliaisqidkvqrsl

    Sequence, based on observed residues (ATOM records): (download) 
    >7nhoX (X:)
titpslkgffigllsgavvlgltfavliaisqidk

  • Chain 'Z':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >7nhoZ (Z:)
mtilfqlalaalvilsfvmvigvpvayaspqdwdrskqliflgsglwialvlvvgvlnff
vv

  • Chain 'y':
    No sequence available.